bioRxiv : the preprint server for biology

A Pandemic-Scale Ancestral Recombination Graph for SARS-CoV-2.

Pub Date : 2025-11-25 DOI: 10.1101/2023.06.08.544212 Shing H Zhan, Yan Wong, Anastasia Ignatieva, Katherine Eaton, Isobel Guthrie, Benjamin Jeffery, Duncan S Palmer, Carmen Lia Murall, Sarah Otto, Jerome Kelleher

Autonomous AI Agents Discover Aging Interventions from Millions of Molecular Profiles.

Pub Date : 2025-11-22 DOI: 10.1101/2023.02.28.530532 Kejun Ying, Alexander Tyshkovskiy, Alibek Moldakozhayev, Hanchen Wang, Cecília G De Magalhães, Sharif Iqbal, Amanda E Garza, Albina Tskhay, Jesse R Poganik, Kexin Huang, Yuanhao Qu, Dmitrii Glubokov, Cheng Jin, Donghyun Lee, Hanna Liu, Carolina Leote, Alexandre Trapp, Lucas Paulo de Lima Camillo, Csaba Kerepesi, Mahdi Moqri, Odin Zhang, Kaiyi Jiang, Fedor Galkin, Alex Zhavoronkov, Jeremy M Van Raamsdonk, Mengdi Wang, Le Cong, Aviv Regev, Jure Leskovec, Tony Wyss-Coray, Vadim N Gladyshev

A minimal tooth enhancer regulates dlx2b expression during zebrafish tooth formation: insights into cis -regulatory logic in organogenesis.

Pub Date : 2025-11-19 DOI: 10.1101/2022.01.20.477116 William R Jackman, Yujin Moon, Carol K Cox, Drew R Anderson, Audrey A DeFusco, Vy M Nguyen, Sarah Y Liu, Elisabeth H Carter, Hana E Littleford, Elizabeth K Richards, Andrea L Jowdry, Yann Gibert