Characterization and Prognosis of Biological Microenvironment in Lung Adenocarcinoma through a Disulfidptosis-Related lncRNAs Signature.

IF 1.4 4区 生物学 Q4 GENETICS & HEREDITY Genetics research Pub Date : 2023-01-01 DOI:10.1155/2023/6670514
Zhuo Yang, Shenglan Cao, Fangli Wang, Kangming Du, Fang Hu
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引用次数: 1

Abstract

Background: The role of disulfidptosis-related lncRNAs remains unclear in lung adenocarcinoma.

Methods: Analysis in R software was conducted using different R packages, which are based on the public data from The Cancer Genome Atlas (TCGA) database. The transwell assay was used to evaluate the invasion and migration abilities of lung cancer cells.

Results: In our study, we identified 1401 lncRNAs significantly correlated with disulfidptosis-related genes (|Cor| > 0.3 and P < 0.05). Then, we constructed a prognosis model consisting of 11 disulfidptosis-related lncRNAs, including AL133445.2, AL442125.1, AC091132.2, AC090948.1, AC020765.2, CASC8, AL606834.1, LINC00707, OGFRP1, U91328.1, and GASAL1. This prognosis model has satisfactory prediction performance. Also, the risk score and clinical information were combined to develop a nomogram. Analyses of biological enrichment and immune-related data were used to identify underlying differences between patients at high-risk and low-risk groups. Moreover, we noticed that the immunotherapy nonresponders have higher risk scores. Meanwhile, patients at a high risk responded more strongly to docetaxel, paclitaxel, and vinblastine. Furthermore, further analysis of the model lncRNA OGFRP1 was conducted, including clinical, immune infiltration, biological enrichment analysis, and a transwell assay. We discovered that by inhibiting OGFRP1, the invasion and migration abilities of lung cancer cells could be remarkably hindered.

Conclusion: The results of our study can provide directions for future research in the relevant areas. Moreover, the prognosis signature we identified has the potential for clinical application.

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肺腺癌中生物微环境的表征和预后通过二硫中毒相关的lncRNAs标记。
背景:二硫中毒相关lncrna在肺腺癌中的作用尚不清楚。方法:基于the Cancer Genome Atlas (TCGA)数据库的公开数据,使用不同的R软件包在R软件中进行分析。采用transwell法评价肺癌细胞的侵袭和迁移能力。结果:在我们的研究中,我们发现1401个lncrna与二硫中毒相关基因显著相关(|Cor > 0.3, P < 0.05)。然后,我们构建了由AL133445.2、AL442125.1、AC091132.2、AC090948.1、AC020765.2、CASC8、AL606834.1、LINC00707、OGFRP1、U91328.1、GASAL1等11个与二sulfidosis相关的lncrna组成的预后模型。该预测模型具有较好的预测效果。此外,风险评分和临床信息相结合,形成一个nomogram。生物富集和免疫相关数据分析用于确定高危组和低危组患者之间的潜在差异。此外,我们注意到免疫治疗无反应者有更高的风险评分。同时,高危患者对多西紫杉醇、紫杉醇和长春花碱的反应更强烈。进一步对模型lncRNA OGFRP1进行分析,包括临床、免疫浸润、生物富集分析和transwell实验。我们发现,通过抑制OGFRP1,可以显著阻碍肺癌细胞的侵袭和迁移能力。结论:本研究结果可为今后相关领域的研究提供方向。此外,我们确定的预后特征具有临床应用的潜力。
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来源期刊
Genetics research
Genetics research 生物-遗传学
自引率
6.70%
发文量
74
审稿时长
>12 weeks
期刊介绍: Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.
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