Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning.

IF 2.6 3区 医学 Q2 BEHAVIORAL SCIENCES Frontiers in Integrative Neuroscience Pub Date : 2023-06-15 eCollection Date: 2023-01-01 DOI:10.3389/fnint.2023.935177
Barna Zajzon, Renato Duarte, Abigail Morrison
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Abstract

To acquire statistical regularities from the world, the brain must reliably process, and learn from, spatio-temporally structured information. Although an increasing number of computational models have attempted to explain how such sequence learning may be implemented in the neural hardware, many remain limited in functionality or lack biophysical plausibility. If we are to harvest the knowledge within these models and arrive at a deeper mechanistic understanding of sequential processing in cortical circuits, it is critical that the models and their findings are accessible, reproducible, and quantitatively comparable. Here we illustrate the importance of these aspects by providing a thorough investigation of a recently proposed sequence learning model. We re-implement the modular columnar architecture and reward-based learning rule in the open-source NEST simulator, and successfully replicate the main findings of the original study. Building on these, we perform an in-depth analysis of the model's robustness to parameter settings and underlying assumptions, highlighting its strengths and weaknesses. We demonstrate a limitation of the model consisting in the hard-wiring of the sequence order in the connectivity patterns, and suggest possible solutions. Finally, we show that the core functionality of the model is retained under more biologically-plausible constraints.

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序列学习的可重现模型:基于奖励学习的模块化尖峰网络的复制与分析。
为了从世界中获取统计规律,大脑必须可靠地处理和学习时空结构信息。尽管越来越多的计算模型试图解释这种序列学习如何在神经硬件中实现,但许多模型的功能仍然有限,或缺乏生物物理上的合理性。如果我们要从这些模型中获取知识,并从机理上更深入地理解大脑皮层回路中的序列处理,那么这些模型及其发现必须是可访问的、可重复的和可定量比较的。在这里,我们通过对最近提出的序列学习模型进行深入研究,来说明这些方面的重要性。我们在开源的 NEST 模拟器中重新实现了模块化柱状结构和基于奖励的学习规则,并成功地复制了原始研究的主要发现。在此基础上,我们深入分析了该模型对参数设置和基本假设的稳健性,突出强调了其优点和缺点。我们证明了该模型的局限性在于连接模式中序列顺序的硬连接,并提出了可能的解决方案。最后,我们展示了在更符合生物学原理的约束条件下,该模型的核心功能得以保留。
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来源期刊
Frontiers in Integrative Neuroscience
Frontiers in Integrative Neuroscience Neuroscience-Cellular and Molecular Neuroscience
CiteScore
4.60
自引率
2.90%
发文量
148
审稿时长
14 weeks
期刊介绍: Frontiers in Integrative Neuroscience publishes rigorously peer-reviewed research that synthesizes multiple facets of brain structure and function, to better understand how multiple diverse functions are integrated to produce complex behaviors. Led by an outstanding Editorial Board of international experts, this multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics, clinicians and the public worldwide. Our goal is to publish research related to furthering the understanding of the integrative mechanisms underlying brain functioning across one or more interacting levels of neural organization. In most real life experiences, sensory inputs from several modalities converge and interact in a manner that influences perception and actions generating purposeful and social behaviors. The journal is therefore focused on the primary questions of how multiple sensory, cognitive and emotional processes merge to produce coordinated complex behavior. It is questions such as this that cannot be answered at a single level – an ion channel, a neuron or a synapse – that we wish to focus on. In Frontiers in Integrative Neuroscience we welcome in vitro or in vivo investigations across the molecular, cellular, and systems and behavioral level. Research in any species and at any stage of development and aging that are focused at understanding integration mechanisms underlying emergent properties of the brain and behavior are welcome.
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