Read-across-based intelligent learning: development of a global q-RASAR model for the efficient quantitative predictions of skin sensitization potential of diverse organic chemicals†

IF 4.3 3区 环境科学与生态学 Q1 CHEMISTRY, ANALYTICAL Environmental Science: Processes & Impacts Pub Date : 2023-09-05 DOI:10.1039/D3EM00322A
Arkaprava Banerjee and Kunal Roy
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Abstract

Environmental chemicals and contaminants cause a wide array of harmful implications to terrestrial and aquatic life which ranges from skin sensitization to acute oral toxicity. The current study aims to assess the quantitative skin sensitization potential of a large set of industrial and environmental chemicals acting through different mechanisms using the novel quantitative Read-Across Structure–Activity Relationship (q-RASAR) approach. Based on the identified important set of structural and physicochemical features, Read-Across-based hyperparameters were optimized using the training set compounds followed by the calculation of similarity and error-based RASAR descriptors. Data fusion, further feature selection, and removal of prediction confidence outliers were performed to generate a partial least squares (PLS) q-RASAR model, followed by the application of various Machine Learning (ML) tools to check the quality of predictions. The PLS model was found to be the best among different models. A simple user-friendly Java-based software tool was developed based on the PLS model, which efficiently predicts the toxicity value(s) of query compound(s) along with their status of Applicability Domain (AD) in terms of leverage values. This model has been developed using structurally diverse compounds and is expected to predict efficiently and quantitatively the skin sensitization potential of environmental chemicals to estimate their occupational and health hazards.

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基于阅读的智能学习:开发全球q-RASAR模型,用于有效定量预测各种有机化学物质的皮肤致敏潜力†
环境化学品和污染物对陆地和水生生物造成广泛的有害影响,从皮肤致敏到急性口服毒性。目前的研究旨在使用新的定量跨结构-活性关系(q-RASAR)方法评估大量工业和环境化学品通过不同机制作用的定量皮肤致敏潜力。基于确定的一组重要的结构和物理化学特征,使用训练集化合物优化基于读取的超参数,然后计算基于相似性和误差的RASAR描述符。进行数据融合、进一步的特征选择和去除预测置信度异常值,以生成偏最小二乘(PLS)q-RASAR模型,然后应用各种机器学习(ML)工具来检查预测质量。PLS模型被发现是不同模型中最好的。基于PLS模型开发了一个简单、用户友好的基于Java的软件工具,该工具可以有效地预测查询化合物的毒性值及其在杠杆值方面的适用域(AD)状态。该模型是使用结构多样的化合物开发的,有望有效和定量地预测环境化学品的皮肤致敏潜力,以估计其职业和健康危害。
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来源期刊
Environmental Science: Processes & Impacts
Environmental Science: Processes & Impacts CHEMISTRY, ANALYTICAL-ENVIRONMENTAL SCIENCES
CiteScore
9.50
自引率
3.60%
发文量
202
审稿时长
1 months
期刊介绍: Environmental Science: Processes & Impacts publishes high quality papers in all areas of the environmental chemical sciences, including chemistry of the air, water, soil and sediment. We welcome studies on the environmental fate and effects of anthropogenic and naturally occurring contaminants, both chemical and microbiological, as well as related natural element cycling processes.
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