Towards modelling emergence in plant systems.

Melissa Tomkins
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Abstract

Plants are complex systems made up of many interacting components, ranging from architectural elements such as branches and roots, to entities comprising cellular processes such as metabolic pathways and gene regulatory networks. The collective behaviour of these components, along with the plant's response to the environment, give rise to the plant as a whole. Properties that result from these interactions and cannot be attributed to individual parts alone are called emergent properties, occurring at different time and spatial scales. Deepening our understanding of plant growth and development requires computational tools capable of handling a large number of interactions and a multiscale approach connecting properties across scales. There currently exist few methods able to integrate models across scales, or models capable of predicting new emergent plant properties. This perspective explores current approaches to modelling emergent behaviour in plants, with a focus on how current and future tools can handle multiscale plant systems.

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植物系统的萌发建模。
植物是由许多相互作用的成分组成的复杂系统,从枝和根等建筑元素到代谢途径和基因调控网络等细胞过程组成的实体。这些组成部分的集体行为,以及植物对环境的反应,产生了植物作为一个整体。这些相互作用产生的特性不能单独归因于单个部分,称为涌现特性,发生在不同的时间和空间尺度上。加深我们对植物生长和发育的理解需要能够处理大量相互作用的计算工具和跨尺度连接属性的多尺度方法。目前很少有方法能够整合跨尺度的模型,或者能够预测新的植物特性的模型。这一观点探讨了目前植物紧急行为建模的方法,重点是当前和未来的工具如何处理多尺度植物系统。
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