Association of MMP7 T > C Gene Variant (rs10502001) and Expression in Chronic Obstructive Pulmonary Disease.

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY DNA and cell biology Pub Date : 2023-09-01 DOI:10.1089/dna.2023.0150
Saurabh Kumar, Suchit Swaroop, Akancha Sahu, Surya Kant, Monisha Banerjee
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Abstract

Patients with chronic obstructive pulmonary disease (COPD) have obstructed airflow through their lungs. Single nucleotide polymorphisms in matrix metalloproteinases (MMPs) genes and the risk of COPD have been the subject of numerous studies, with conflicting results. This investigation was conducted to determine whether the MMP7 (T>C) gene variant (rs10502001) was associated with an increased risk of COPD. A case-control study was conducted with 360 subjects (180 healthy controls and 180 COPD cases). The polymerase chain reaction (PCR)-restriction fragment length polymorphism method was used to genotype the SNP rs1050200. mRNA expression of MMP7 was performed using RT-PCR. The genotypic/allelic frequencies and carriage rates of rs10502001 (T>C) polymorphism were evaluated in 180 each of healthy controls and COPD cases. Cases have higher TC/CC genotype frequencies than controls. The "CC" genotype was found to be significantly associated with increased COPD risk (p = 0.016). The "C" allele frequency was higher in cases than in controls and showed significant association with COPD (p = 0.005). The carriage rate frequencies of T(-) and C(+) were significantly higher in cases than in controls (p = 0.031 and 0.047, respectively). MMP7 expression was significantly upregulated (p = 0.001) in COPD cases as compared with the controls. In addition, comparisons of MMP7 expression between the COPD cases with different genotypes showed that the "CC" genotype cases had significantly higher expression than those with "TT" genotype. The present findings showed statistically significant correlation of MMP7 (T>C) polymorphism and expression with COPD. Therefore, MMP7 responsible for degradation of elastin has been strongly linked to the progression of COPD.

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MMP7 T > C基因变异(rs10502001)与慢性阻塞性肺疾病表达的关系
慢性阻塞性肺疾病(COPD)患者的肺部气流受阻。基质金属蛋白酶(MMPs)基因的单核苷酸多态性与慢性阻塞性肺病的风险已经成为许多研究的主题,但结果相互矛盾。本研究旨在确定MMP7 (T>C)基因变异(rs10502001)是否与COPD风险增加相关。对360名受试者进行病例对照研究(180名健康对照者和180名COPD患者)。采用聚合酶链反应(PCR)-限制性片段长度多态性方法对SNP rs1050200进行基因分型。RT-PCR检测MMP7 mRNA的表达。分别在180例健康对照和COPD患者中测定rs10502001 (T>C)多态性的基因型/等位基因频率和携带率。病例TC/CC基因型频率高于对照组。发现“CC”基因型与COPD风险增加显著相关(p = 0.016)。病例中“C”等位基因频率高于对照组,与COPD有显著相关性(p = 0.005)。病例中T(-)和C(+)的携带频率显著高于对照组(p分别为0.031和0.047)。与对照组相比,COPD患者的MMP7表达显著上调(p = 0.001)。此外,比较不同基因型COPD患者的MMP7表达,发现“CC”基因型患者的MMP7表达明显高于“TT”基因型患者。MMP7 (T>C)多态性及表达与COPD的相关性具有统计学意义。因此,负责弹性蛋白降解的MMP7与COPD的进展密切相关。
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来源期刊
DNA and cell biology
DNA and cell biology 生物-生化与分子生物学
CiteScore
6.60
自引率
0.00%
发文量
93
审稿时长
1.5 months
期刊介绍: DNA and Cell Biology delivers authoritative, peer-reviewed research on all aspects of molecular and cellular biology, with a unique focus on combining mechanistic and clinical studies to drive the field forward. DNA and Cell Biology coverage includes: Gene Structure, Function, and Regulation Gene regulation Molecular mechanisms of cell activation Mechanisms of transcriptional, translational, or epigenetic control of gene expression Molecular Medicine Molecular pathogenesis Genetic approaches to cancer and autoimmune diseases Translational studies in cell and molecular biology Cellular Organelles Autophagy Apoptosis P bodies Peroxisosomes Protein Biosynthesis and Degradation Regulation of protein synthesis Post-translational modifications Control of degradation Cell-Autonomous Inflammation and Host Cell Response to Infection Responses to cytokines and other physiological mediators Evasive pathways of pathogens.
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