Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "Turkish DeLight".

Necati Atalay, Enver Kamil Akcan, Mehmet Gül, Esra Ayan, Ebru Destan, Fatma Betül Ertem, Nurettin Tokay, Barış Çakilkaya, Zeliş Nergiz, Gözde Karakadioğlu, Abdullah Kepceoğlu, İlkin Yapici, Bilge Tosun, Nilüfer Baldir, Günseli Yildirim, J Austin Johnson, Ömür Güven, Alaleh Shafiei, Nazlı Eylül Arslan, Merve Yilmaz, Cahine Kulakman, Seyide Seda Paydos, Zeynep Sena Çinal, Kardelen Şabanoğlu, Ayşegül Pazarçeviren, Ayşenur Yilmaz, Başak Canbay, Bengisu Aşci, Esra Kartal, Serra Tavli, Mehmet Çaliseki, Günce Göç, Arif Mermer, Gamze Yeşilay, Sevde Altuntaş, Hiroshi Tateishi, Masami Otsuka, Mikako Fujita, Şaban Tekin, Halilibrahim Çiftçi, Serdar Durdaği, Gizem Dinler Doğanay, Ezgi Karaca, Burcu Kaplan Türköz, Burak Veli Kabasakal, Ahmet Kati, Hasan Demirci
{"title":"Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source \"<i>Turkish DeLight</i>\".","authors":"Necati Atalay,&nbsp;Enver Kamil Akcan,&nbsp;Mehmet Gül,&nbsp;Esra Ayan,&nbsp;Ebru Destan,&nbsp;Fatma Betül Ertem,&nbsp;Nurettin Tokay,&nbsp;Barış Çakilkaya,&nbsp;Zeliş Nergiz,&nbsp;Gözde Karakadioğlu,&nbsp;Abdullah Kepceoğlu,&nbsp;İlkin Yapici,&nbsp;Bilge Tosun,&nbsp;Nilüfer Baldir,&nbsp;Günseli Yildirim,&nbsp;J Austin Johnson,&nbsp;Ömür Güven,&nbsp;Alaleh Shafiei,&nbsp;Nazlı Eylül Arslan,&nbsp;Merve Yilmaz,&nbsp;Cahine Kulakman,&nbsp;Seyide Seda Paydos,&nbsp;Zeynep Sena Çinal,&nbsp;Kardelen Şabanoğlu,&nbsp;Ayşegül Pazarçeviren,&nbsp;Ayşenur Yilmaz,&nbsp;Başak Canbay,&nbsp;Bengisu Aşci,&nbsp;Esra Kartal,&nbsp;Serra Tavli,&nbsp;Mehmet Çaliseki,&nbsp;Günce Göç,&nbsp;Arif Mermer,&nbsp;Gamze Yeşilay,&nbsp;Sevde Altuntaş,&nbsp;Hiroshi Tateishi,&nbsp;Masami Otsuka,&nbsp;Mikako Fujita,&nbsp;Şaban Tekin,&nbsp;Halilibrahim Çiftçi,&nbsp;Serdar Durdaği,&nbsp;Gizem Dinler Doğanay,&nbsp;Ezgi Karaca,&nbsp;Burcu Kaplan Türköz,&nbsp;Burak Veli Kabasakal,&nbsp;Ahmet Kati,&nbsp;Hasan Demirci","doi":"10.55730/1300-0152.2637","DOIUrl":null,"url":null,"abstract":"<p><p>X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.</p>","PeriodicalId":23375,"journal":{"name":"Turkish journal of biology = Turk biyoloji dergisi","volume":"47 1","pages":"1-13"},"PeriodicalIF":0.0000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387866/pdf/","citationCount":"7","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Turkish journal of biology = Turk biyoloji dergisi","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.55730/1300-0152.2637","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 7

Abstract

X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.

Abstract Image

Abstract Image

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
土耳其光源“土耳其软糖”下生物大分子的低温x射线晶体学研究。
x射线晶体学是一种强大的结构生物学技术,可以提供生物大分子的高分辨率原子结构。科学家们利用这项技术来揭示生物大分子(如蛋白质、核酸、蛋白质复合物、蛋白质-核酸复合物或大型生物隔室)的机制和结构细节。自成立以来,由于缺乏单晶x射线衍射仪,单晶结晶学从未在日本进行过。最近在健康科学大学(İstanbul, trkiye)建立的x射线衍射设备将使土耳其和国际研究人员能够轻松地从单晶中进行生物大分子的高分辨率结构分析。在这里,我们描述了最先进的家庭源x射线的技术和实用前景,使用溶菌酶作为模型蛋白。本文描述的方法和实践可以应用于任何生物样品的结构研究。因此,本文将是一个有价值的实用指南,从样品制备到数据分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Vitamin D receptor mediates liver ischemia and reperfusion injury by autophagy-regulated M2 macrophage polarization. Functional enhancement of acute infracted heart by coinjection of autologous adipose-derived stem cells with matrigel. tsRNA-15797-modified BMSC-derived exosomes mediate LFNG to induce angiogenesis in osteonecrosis of the femoral head. LINC00460 mediates HMGA2 expression through binding to miRNA-143-5p competitively in gastric carcinoma. Emerging applications of 3D engineered constructs from plant seed extracts.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1