Genetic Analysis of Platelet-Related Genes in Hepatocellular Carcinoma Reveals a Novel Prognostic Signature and Determines PRKCD as the Potential Molecular Bridge.

IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Biological Procedures Online Pub Date : 2022-12-03 DOI:10.1186/s12575-022-00185-9
Xiangyu Li, Kai Zhao, Yun Lu, Jianming Wang, Wei Yao
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Abstract

Background: Hepatocellular carcinoma (HCC) belongs to a representative lethality gastrointestinal malignancy, and comprehensive management of HCC remains intractable at present on account of its invasive biological feature that is easy to relapse and early metastasis. The intimate connection between platelets and tumor progression has been widely reported, and platelet-related indicators are also used in the clinical practice of carcinoma. This work is designed to investigate the significance of platelet-related genes in the prognostic prediction of patients with HCC and their potential role in the cross-talk between HCC cells and platelets in the tumor microenvironment.

Methods: By integrating the RNA-seq data and clinicopathological information of HCC patients, we extracted prognosis-associated platelet-related genes based on the univariate cox analysis and further established a relevant prognostic signature via the lasso cox regression analysis, and two independent HCC cohorts were used as external validation. Multiple bioinformatics methods were utilized to explore the underlying functional discrepancy between different risk groups classified by the risk model. And in vitro proliferation, invasion, and migration assays were conducted to investigate the effect of platelet stimulation on HCC cells' viability and motility, and flow cytometric analysis was exerted to demonstrate the influence of HCC cells on platelet activation.

Results: A novel platelet-related risk model was developed and patients both in the training and testing cohorts were divided into distinct risk subgroups according to the median risk score. It was observed that the high-risk status was closely associated with poor prognosis and worse clinicopathological parameters. Meanwhile, an obvious discrepancy in the constitution of the immune microenvironment also indicated that distinct immune status might be a potential determinant affecting prognosis as well as immunotherapy reactiveness. Moreover, in vitro experiments demonstrated that PRKCD could act as a molecular bridge between tumor cells and platelets, which could either participate in regulating tumor malignant phenotype or mediating platelet activation.

Conclusions: In brief, this work reveals a novel platelet-related risk signature for prognostic evaluation of HCC patients and confirms that PRKCD is a key messenger in HCC cell-platelet interaction and plays a crucial role in mediating platelet-induced tumor progression.

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对肝细胞癌中血小板相关基因的遗传分析揭示了一种新的预后特征,并确定 PRKCD 为潜在的分子桥梁。
背景:肝细胞癌(HCC)是一种具有代表性的致死性消化道恶性肿瘤,由于其易复发和早期转移的侵袭性生物学特征,目前对HCC的综合治疗仍很棘手。血小板与肿瘤进展的密切关系已被广泛报道,血小板相关指标也被应用于癌症的临床实践中。本研究旨在探讨血小板相关基因在HCC患者预后预测中的意义及其在HCC细胞与血小板在肿瘤微环境中的交叉对话中的潜在作用:通过整合HCC患者的RNA-seq数据和临床病理信息,我们在单变量cox分析的基础上提取了与预后相关的血小板相关基因,并进一步通过lasso cox回归分析建立了相关的预后特征,并将两个独立的HCC队列作为外部验证。利用多种生物信息学方法探讨了风险模型所划分的不同风险组之间的潜在功能差异。通过体外增殖、侵袭和迁移实验研究血小板刺激对HCC细胞活力和运动的影响,并通过流式细胞分析证明HCC细胞对血小板活化的影响:结果:建立了一个新的血小板相关风险模型,并根据中位风险评分将训练组和测试组的患者分为不同的风险亚组。结果发现,高风险状态与不良预后和较差的临床病理参数密切相关。同时,免疫微环境构成的明显差异也表明,不同的免疫状态可能是影响预后和免疫治疗反应性的潜在决定因素。此外,体外实验表明,PRKCD可作为肿瘤细胞和血小板之间的分子桥梁,参与调节肿瘤恶性表型或介导血小板活化:简而言之,这项研究揭示了一种新的血小板相关风险特征,可用于评估 HCC 患者的预后,并证实 PRKCD 是 HCC 细胞与血小板相互作用的关键信使,在介导血小板诱导的肿瘤进展中起着至关重要的作用。
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来源期刊
Biological Procedures Online
Biological Procedures Online 生物-生化研究方法
CiteScore
10.50
自引率
0.00%
发文量
16
审稿时长
>12 weeks
期刊介绍: iological Procedures Online publishes articles that improve access to techniques and methods in the medical and biological sciences. We are also interested in short but important research discoveries, such as new animal disease models. Topics of interest include, but are not limited to: Reports of new research techniques and applications of existing techniques Technical analyses of research techniques and published reports Validity analyses of research methods and approaches to judging the validity of research reports Application of common research methods Reviews of existing techniques Novel/important product information Biological Procedures Online places emphasis on multidisciplinary approaches that integrate methodologies from medicine, biology, chemistry, imaging, engineering, bioinformatics, computer science, and systems analysis.
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