Cefmetazole sodium as an allosteric effector that regulates the oxygen supply efficiency of adult hemoglobin.

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular Structure & Dynamics Pub Date : 2024-09-01 Epub Date: 2023-08-09 DOI:10.1080/07391102.2023.2245043
Peilin Shu, Guoxing You, Weidan Li, Yuzhi Chen, Zongtang Chu, Dong Qin, Ying Wang, Hong Zhou, Lian Zhao
{"title":"Cefmetazole sodium as an allosteric effector that regulates the oxygen supply efficiency of adult hemoglobin.","authors":"Peilin Shu, Guoxing You, Weidan Li, Yuzhi Chen, Zongtang Chu, Dong Qin, Ying Wang, Hong Zhou, Lian Zhao","doi":"10.1080/07391102.2023.2245043","DOIUrl":null,"url":null,"abstract":"<p><p>Allosteric effectors play an important role in regulating the oxygen supply efficiency of hemoglobin for blood storage and disease treatment. However, allosteric effectors that are approved by the US FDA are limited. In this study, cefmetazole sodium (CS) was found to bind adult hemoglobin (HbA) from FDA library (1338 compounds) using surface plasmon resonance imaging high-throughput screening. Using surface plasmon resonance (SPR), the interaction between CS and HbA was verified. The oxygen dissociation curve of HbA after CS interaction showed a significant increase in P<sub>50</sub> and theoretical oxygen-release capacity. Acid-base sensitivity (SI) exhibited a decreasing trend, although not significantly different. An oxygen dissociation assay indicated that CS accelerated HbA deoxygenation. Microfluidic modulated spectroscopy showed that CS changed the ratio of the alpha-helix to the beta-sheet of HbA. Molecular docking suggested CS bound to HbA's β-chains <i>via</i> hydrogen bonds, with key amino acids being N282, K225, H545, K625, K675, and V544.The results of molecular dynamics simulations (MD) revealed a stable orientation of the HbA-CS complex. CS did not significantly affect the P<sub>50</sub> of bovine hemoglobin, possibly due to the lack of Valβ1 and Hisβ2, indicating that these were the crucial amino acids involved in HbA's oxygen affinity. Competition between the 2,3-Diphosphoglycerate (2,3-DPG) and CS in the HbA interaction was also determined by SPR, molecular docking and MD. In summary, CS could interact with HbA and regulate the oxygen supply efficiency <i>via</i> forming stable hydrogen bonds with the β-chains of HbA, and showed competition with 2,3-DPG.Communicated by Ramaswamy H. Sarma.</p>","PeriodicalId":15272,"journal":{"name":"Journal of Biomolecular Structure & Dynamics","volume":null,"pages":null},"PeriodicalIF":2.7000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomolecular Structure & Dynamics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/07391102.2023.2245043","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/8/9 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Allosteric effectors play an important role in regulating the oxygen supply efficiency of hemoglobin for blood storage and disease treatment. However, allosteric effectors that are approved by the US FDA are limited. In this study, cefmetazole sodium (CS) was found to bind adult hemoglobin (HbA) from FDA library (1338 compounds) using surface plasmon resonance imaging high-throughput screening. Using surface plasmon resonance (SPR), the interaction between CS and HbA was verified. The oxygen dissociation curve of HbA after CS interaction showed a significant increase in P50 and theoretical oxygen-release capacity. Acid-base sensitivity (SI) exhibited a decreasing trend, although not significantly different. An oxygen dissociation assay indicated that CS accelerated HbA deoxygenation. Microfluidic modulated spectroscopy showed that CS changed the ratio of the alpha-helix to the beta-sheet of HbA. Molecular docking suggested CS bound to HbA's β-chains via hydrogen bonds, with key amino acids being N282, K225, H545, K625, K675, and V544.The results of molecular dynamics simulations (MD) revealed a stable orientation of the HbA-CS complex. CS did not significantly affect the P50 of bovine hemoglobin, possibly due to the lack of Valβ1 and Hisβ2, indicating that these were the crucial amino acids involved in HbA's oxygen affinity. Competition between the 2,3-Diphosphoglycerate (2,3-DPG) and CS in the HbA interaction was also determined by SPR, molecular docking and MD. In summary, CS could interact with HbA and regulate the oxygen supply efficiency via forming stable hydrogen bonds with the β-chains of HbA, and showed competition with 2,3-DPG.Communicated by Ramaswamy H. Sarma.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
头孢美唑钠是一种调节成人血红蛋白供氧效率的异位效应器。
在调节血红蛋白的供氧效率以储存血液和治疗疾病方面,异构效应物发挥着重要作用。然而,获得美国食品及药物管理局批准的异生效应物质非常有限。在这项研究中,利用表面等离子体共振成像高通量筛选技术,发现头孢美唑钠(CS)能与 FDA 文库(1338 种化合物)中的成人血红蛋白(HbA)结合。利用表面等离子体共振(SPR)技术验证了 CS 与 HbA 之间的相互作用。CS 作用后 HbA 的氧解离曲线显示 P50 和理论氧释放能力显著增加。酸碱敏感性(SI)呈下降趋势,但差异不大。氧解离试验表明,CS 加快了 HbA 的脱氧。微流体调制光谱显示,CS 改变了 HbA 的α-螺旋与β-片的比例。分子对接表明,CS通过氢键与HbA的β链结合,关键氨基酸为N282、K225、H545、K625、K675和V544。CS 对牛血红蛋白的 P50 没有明显影响,这可能是由于缺乏 Valβ1 和 Hisβ2,这表明这两个氨基酸是影响 HbA 氧亲和力的关键氨基酸。通过 SPR、分子对接和 MD 还确定了 2,3-二磷酸甘油酯(2,3-DPG)和 CS 在 HbA 相互作用中的竞争关系。总之,CS能与HbA相互作用,通过与HbA的β链形成稳定的氢键来调节供氧效率,并表现出与2,3-DPG的竞争性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
期刊最新文献
The pharmacological actions of Danzhi-xiaoyao-San on depression involve lysophosphatidic acid and microbiota-gut-brain axis: novel insights from a systems pharmacology analysis of a double-blind, randomized, placebo-controlled clinical trial. Broadening the scope of WEE1 inhibitors: identifying novel drug candidates via computational approaches and drug repurposing. Molecularly imprinted polymer-based sensors for identification volatile compounds in pharmaceutical products: in silico rational design. Computational insights into pediatric adenovirus inhibitors: in silico strategies for drug repurposing. Predicting the changes in neutralizing antibody interaction with G protein derived from Bangladesh isolates of Nipah virus: molecular dynamics based approach.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1