Structure of pyridoxal 5′-phosphate-bound d-threonine aldolase from Chlamydomonas reinhardtii

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Acta crystallographica. Section F, Structural biology communications Pub Date : 2023-02-07 DOI:10.1107/S2053230X23000304
Yuki Hirato, Masaru Goto, Taichi Mizobuchi, Hisashi Muramatsu, Minoru Tanigawa, Katsushi Nishimura
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Abstract

d-Threonine aldolase (DTA) is a pyridoxal-5′-phosphate-dependent enzyme which catalyzes the reversible aldol reaction of glycine with a corresponding aldehyde to yield the d-form β-hydroxy-α-amino acid. This study produced and investigated the crystal structure of DTA from Chlamydomonas reinhardtii (CrDTA) at 1.85 Å resolution. To our knowledge, this is the first report on the crystal structure of eukaryotic DTA. Compared with the structure of bacterial DTA, CrDTA has a similar arrangement of active-site residues. On the other hand, we speculated that some non-conserved residues alter the affinity for substrates and inhibitors. The structure of CrDTA could provide insights into the structural framework for structure-guided protein engineering studies to modify reaction selectivity.

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莱茵衣藻吡哆醛5′-磷酸结合d-苏氨酸醛缩酶的结构
d-苏氨酸醛缩酶(d-苏氨酸醛缩酶,DTA)是一种吡哆醛-5 '磷酸依赖酶,它能催化甘氨酸与相应醛的可逆醛缩反应,生成d型β-羟基-α-氨基酸。本研究以1.85 Å分辨率制备并研究了莱茵衣藻(Chlamydomonas reinhardtii, CrDTA)的DTA晶体结构。据我们所知,这是关于真核DTA晶体结构的第一篇报道。与细菌DTA的结构相比,CrDTA具有相似的活性位点残基排列。另一方面,我们推测一些非保守残基改变了对底物和抑制剂的亲和力。CrDTA的结构可以为结构导向的蛋白质工程研究提供结构框架,以改变反应选择性。
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Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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