Construction of PARPi Resistance-related Competing Endogenous RNA Network.

IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Current Genomics Pub Date : 2022-08-11 DOI:10.2174/1389202923666220527114108
Lili Kong, Jiaqi Xu, Lijun Yu, Shuo Liu, Zongjian Liu, Juanjuan Xiang
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Abstract

Objective: Ovarian cancer is a kind of common gynecological malignancy in women. PARP inhibitors (PARPi) have been approved for ovarian cancer treatment. However, the primary and acquired resistance have limited the application of PARPi. The mechanisms remain to be elucidated. Methods: In this study, we characterized the expression profiles of mRNA and nonconding RNAs (ncRNAs) and constructed the regulatory networks based on RNA sequencing in PARPi Olaparib-induced ovarian cancer cells. Results: We found that the functions of the differentially expressed genes were enriched in "PI3K/AKT signaling pathway," "MAPK signaling pathway" and "metabolic process". The functions of DELs (cis) were enriched in "Human papillomavirus infection""tight junction" "MAPK signaling pathway". As the central regulator of ceRNAs, the differentially expressed miRNAs were enriched in "Human papillomavirus infection" "MAPK signaling pathway" "Ras signaling pathway". According to the degree of interaction, we identified 3 lncRNAs, 2 circRNAs, 7 miRNAs, and 12 mRNA as the key regulatory ceRNA axis, in which miR-320b was the important mediator. Conclusion: Here, we revealed the key regulatory lncRNA (circRNA)-miRNA-mRNA axis and their involved pathways in the PARPi resistant ovarian cancer cells. These findings provide new insights into exploring the ceRNA regulatory networks and developing new targets for PARPi resistance.

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PARPi耐药相关竞争内源RNA网络的构建
目的:卵巢癌是女性常见的妇科恶性肿瘤。PARP抑制剂(PARPi)已被批准用于卵巢癌治疗。然而,原发耐药和获得性耐药限制了PARPi的应用。其机制仍有待阐明。方法:在本研究中,我们对PARPi olaparib诱导的卵巢癌细胞中mRNA和ncRNAs的表达谱进行了表征,并基于RNA测序构建了调控网络。结果:我们发现差异表达基因在“PI3K/AKT信号通路”、“MAPK信号通路”和“代谢过程”中功能丰富。DELs (cis)在“人乳头瘤病毒感染”“紧密连接”“MAPK信号通路”中功能丰富。作为cerna的中枢调控因子,差异表达的mirna在“人乳头瘤病毒感染”“MAPK信号通路”“Ras信号通路”中富集。根据相互作用的程度,我们确定了3个lncrna、2个circrna、7个mirna和12个mRNA作为关键的调控ceRNA轴,其中miR-320b是重要的中介。结论:本研究揭示了PARPi耐药卵巢癌细胞的关键调控lncRNA (circRNA)-miRNA-mRNA轴及其相关通路。这些发现为探索ceRNA调控网络和开发PARPi耐药新靶点提供了新的见解。
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来源期刊
Current Genomics
Current Genomics 生物-生化与分子生物学
CiteScore
5.20
自引率
0.00%
发文量
29
审稿时长
>0 weeks
期刊介绍: Current Genomics is a peer-reviewed journal that provides essential reading about the latest and most important developments in genome science and related fields of research. Systems biology, systems modeling, machine learning, network inference, bioinformatics, computational biology, epigenetics, single cell genomics, extracellular vesicles, quantitative biology, and synthetic biology for the study of evolution, development, maintenance, aging and that of human health, human diseases, clinical genomics and precision medicine are topics of particular interest. The journal covers plant genomics. The journal will not consider articles dealing with breeding and livestock. Current Genomics publishes three types of articles including: i) Research papers from internationally-recognized experts reporting on new and original data generated at the genome scale level. Position papers dealing with new or challenging methodological approaches, whether experimental or mathematical, are greatly welcome in this section. ii) Authoritative and comprehensive full-length or mini reviews from widely recognized experts, covering the latest developments in genome science and related fields of research such as systems biology, statistics and machine learning, quantitative biology, and precision medicine. Proposals for mini-hot topics (2-3 review papers) and full hot topics (6-8 review papers) guest edited by internationally-recognized experts are welcome in this section. Hot topic proposals should not contain original data and they should contain articles originating from at least 2 different countries. iii) Opinion papers from internationally recognized experts addressing contemporary questions and issues in the field of genome science and systems biology and basic and clinical research practices.
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