Phytate-Induced Dose-Response Auto-Activation of Enzyme in Commercial Recombinant Phytase From Escherichia coli.

IF 1.6 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Iranian Journal of Biotechnology Pub Date : 2023-01-01 DOI:10.30498/ijb.2022.334455.3315
Elmira Naghdi, Zahra Moosavi-Nejad, Bahman Gholamhossein Goudarzi, Mohammad Reza Soudi
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Abstract

Background: Microbial phytase is one of the most widely used enzymes in food industries like cattle, poultry, and aquaculture food. Therefore, understanding the kinetic properties of the enzyme is very important to evaluate and predict its behavior in the digestive system of livestock. Working on phytase is one of the most challenging experiments because of some problems, including free inorganic phosphate (FIP) impurity in phytate (substrate) and interference reaction of the reagent with both phosphates (product and phytate impurity).

Objective: In the present study, FIP impurity of phytate was removed, and then it was shown that the substrate (phytate) has a dual role in enzyme kinetics: substrate and activator.

Material and methods: phytate impurity was decreased by two-step recrystallization prior to the enzyme assay. The impurity removal was estimated by the ISO30024:2009 method and confirmed by Fourier-transform infrared (FTIR) spectroscopy. The kinetic behavior of phytase activity was evaluated using the purified phytate as substrate by non-Michaelis-Menten analysis, including Eadie-Hofstee, Clearance, and Hill plots. The possibility of an allosteric site on phytase was assessed by molecular docking.

Results: The results showed a 97.2% decrease in FIP due to recrystallization. The phytase saturation curve had a sigmoidal appearance, and Lineweaver-Burk plot with a negative y-intercept indicated the positive homotropic effect of the substrate on the enzyme activity. A right-side concavity of Eadie-Hofstee plot confirmed it. Hill coefficient was calculated to be 2.26. Molecular docking also showed that Escherichia coli phytase molecule has another binding site for phytate very close to the active site, called "allosteric site".

Conclusions: The observations strongly propose the existence of an intrinsic molecular mechanism in Escherichia coli phytase molecules to be promoted for more activity by its substrate, phytate (positive homotropic allosteric effect). In silico analysis showed that phytate binding to the allosteric site caused new substrate-mediated inter-domain interactions, which seems to lead to a more active conformation of phytase. Our results provide a strong basis for animal feed development strategies, especially in the case of poultry food and supplements, regarding a short food passage time in their gastrointestinal tract and variable concentration of phytate along with it. Additionally, the results strengthen our understanding of phytase auto-activation as well as allosteric regulation of monomeric proteins in general.

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植酸诱导的商业重组大肠杆菌植酸酶的剂量-反应自激活。
背景:微生物植酸酶是食品工业中应用最广泛的酶之一,如牛、家禽和水产养殖食品。因此,了解该酶的动力学性质对评价和预测其在牲畜消化系统中的行为具有重要意义。植酸酶的实验研究是最具挑战性的实验之一,存在着植酸(底物)中游离无机磷酸盐(FIP)杂质以及试剂与磷酸盐(产物和植酸杂质)的干扰反应等问题。目的:通过对FIP杂质植酸盐的去除,证明了底物(植酸盐)在酶动力学中具有底物和活化剂的双重作用。材料和方法:酶分析前用两步重结晶法减少植酸杂质。杂质去除率采用ISO30024:2009方法进行估计,并用傅里叶变换红外(FTIR)光谱进行验证。以纯化的植酸盐为底物,采用非michaelis - menten分析,包括edie - hofstee、Clearance和Hill图,评估植酸酶活性的动力学行为。通过分子对接的方法评估植酸酶变构位点的可能性。结果:由于再结晶,FIP下降97.2%。植酸酶饱和度曲线呈s型曲线,y轴截距为负的Lineweaver-Burk图表明底物对酶活性有正向同向作用。edie - hofstee地块右侧的凹面证实了这一点。希尔系数计算为2.26。分子对接还表明,大肠杆菌植酸酶分子与植酸盐的结合位点非常接近,称为“变构位点”。结论:这些观察结果有力地提出了大肠杆菌植酸酶分子中存在一种内在的分子机制,它的底物植酸盐(正同向变构效应)促进了植酸酶分子的活性。硅分析表明,植酸与变构位点的结合引起了新的底物介导的结构域间相互作用,这似乎导致了更活跃的植酸酶构象。我们的研究结果为动物饲料开发策略提供了强有力的基础,特别是在家禽食品和补充剂的情况下,关于食物在胃肠道中的短暂通过时间和随其变化的植酸浓度。此外,这些结果加强了我们对植酸酶自激活以及单体蛋白的变构调节的理解。
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来源期刊
Iranian Journal of Biotechnology
Iranian Journal of Biotechnology BIOTECHNOLOGY & APPLIED MICROBIOLOGY-
CiteScore
2.60
自引率
7.70%
发文量
20
期刊介绍: Iranian Journal of Biotechnology (IJB) is published quarterly by the National Institute of Genetic Engineering and Biotechnology. IJB publishes original scientific research papers in the broad area of Biotechnology such as, Agriculture, Animal and Marine Sciences, Basic Sciences, Bioinformatics, Biosafety and Bioethics, Environment, Industry and Mining and Medical Sciences.
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