Gate Cloud: An Integration of Gate Monte Carlo Simulation with a Cloud Computing Environment

B. Rowedder, Hui Wang, Y. Kuang
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Abstract

The GEANT4-based GATE is a unique and powerful Monte Carlo (MC) platform, which provides a single code library allowing the simulation of specific medical physics applications. However, this rigorous yet flexible platform is used only sparingly in the clinic due to its lengthy calculation time and significant computational overhead. By accessing the much more powerful computational resources of a cloud computing environment, GATE's run time can be significantly reduced to clinically feasible levels without the sizable investment of a local high performance cluster. This study investigated a reliable and efficient execution of GATE MC simulation using a commercial cloud computing services. A Monte Carlo cloud computing framework, Gate Cloud, for medical physics applications was proposed. Amazon's Elastic Compute Cloud (EC2) was used to launch several nodes equipped with GATE V6.1. The Positron emission tomography (PET) Benchmark included in the GATE software was repeated for various cluster sizes between 1 and 100 nodes in order to establish the ideal cluster size in terms of cost and time efficiency. The study shows that increasing the number of nodes in the cluster resulted in a decrease in calculation time that could be expressed with an inverse power model. Simulation results were not affected by the cluster size, indicating that integrity of a calculation is preserved in a cloud computing environment. With high power computing continuing to lower in price and accessibility, implementing Gate Cloud for clinical applications will continue to become more attractive.
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门云:门蒙特卡罗模拟与云计算环境的集成
基于geant4的GATE是一个独特而强大的蒙特卡罗(MC)平台,它提供了一个单一的代码库,允许模拟特定的医学物理应用。然而,由于其冗长的计算时间和显著的计算开销,这种严谨而灵活的平台仅在临床中很少使用。通过访问云计算环境中更强大的计算资源,GATE的运行时间可以显着减少到临床可行的水平,而无需对本地高性能集群进行大量投资。本研究探讨了使用商业云计算服务可靠有效地执行GATE MC模拟。提出了一种用于医学物理应用的蒙特卡罗云计算框架Gate cloud。使用Amazon的弹性计算云(EC2)来启动配备GATE V6.1的几个节点。为了在成本和时间效率方面建立理想的簇大小,在1到100个节点之间重复GATE软件中包含的正电子发射断层扫描(PET)基准。研究表明,集群中节点数量的增加导致计算时间的减少,可以用逆幂模型表示。模拟结果不受聚类大小的影响,表明在云计算环境中保持了计算的完整性。随着高性能计算在价格和可访问性方面的持续降低,在临床应用中实施Gate云将继续变得更具吸引力。
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