A Novel Cache and SSD-based Index Structure for Health Record Indexing

Yang Du, Sule YAYILGAN YILDIRIM
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Abstract

Textual-based indexing has been widely used in various medical databases. It plays increasingly important role in modern medical information systems since it directly affects the diagnosis time. Building an efficient indexing system will greatly improve the quality of treatment and save lives in emergency departments of hospitals. Researchers have set up various algorithms to optimize the query response time. B+ tree is ubiquitous in all kinds of databases as a well-known index structure with superior performance [1]. However, it shows poor performance especially when the database operation involves many retrievals. It has been proven that query performance can be significantly improved if the node size is equal to cache size. Fractal prefetching B+ Tree was developed by a group of researchers to improve the retrieval performance. Cache-first approach produces good results but it cannot simultaneously utilize CPU cache and SSD page. We propose a multi-dimensional tree structure named CacheSSD-Based tree (Fig.1).
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一种基于缓存和ssd的健康记录索引结构
基于文本的索引在各种医学数据库中得到了广泛的应用。它直接影响到诊断时间,在现代医疗信息系统中发挥着越来越重要的作用。建立一个高效的索引系统将大大提高医院急诊科的治疗质量,挽救生命。研究人员已经建立了各种算法来优化查询响应时间。B+树作为一种众所周知的性能优越的索引结构,普遍存在于各种数据库中[1]。但是,它表现出较差的性能,特别是当数据库操作涉及许多检索时。事实证明,如果节点大小等于缓存大小,查询性能可以得到显著提高。分形预取B+树是一种提高检索性能的方法。缓存优先的方法效果很好,但不能同时利用CPU缓存和SSD页面。我们提出了一个多维树结构,命名为CacheSSD-Based树(图1)。
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Challenges of Trustable AI and Added-Value on Health - Proceedings of MIE 2022, Medical Informatics Europe, Nice, France, May 27-30, 2022 Public Health and Informatics - Proceedings of MIE 2021, Medical Informatics Europe, Virtual Event, May 29-31, 2021 NATHCARE - Networking Alpine Health for Continuity of Care. The pilot case in the Province of Trento The Young Person's Guide to Biomedical Informatics Computer-Aided Cluster Analysis of Citation Networks as a Tool of Research Policy in Biomedicine
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