3D Multi-scale DenseNet for Malignancy Grade Classification of Pulmonary Nodules

Weilun Wang, G. Chakraborty, B. Chakraborty
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Abstract

With the recent development of algorithm for computer-aided diagnosis (CAD) system, detection of pulmonary nodules from computed tomography (CT) imaging data with high accuracy is becoming possible. Existing CAD system is able to automatically output the location of a nodule with its confidence. It helps the radiologist to save time for nodule detection work. However, not all nodules will develop into lung cancer. Depending on its grade of malignancy, the probability of developing into lung cancer is different. Evaluating the grade of malignancy of pulmonary nodule is performed by doctors and highly depends on personal experience. In order to further automate the process of lung cancer prognosis, a system that accurately evaluates the grade of malignancy of a pulmonary nodule is needed. It will be helpful to re-evaluate the detected nodules and provide proper suggestion for therapeutic method. There are two types of tasks for malignancy classification (1) to classify a sample into benign or malignant (2) to classify a sample into malignancy grades (from grade-1 to grade-5). Many researches have achieved a high accuracy for task-1, but the results on task-2 are still poor. In this work, we present a 3D Multi-scale DenseNet to classify the grade of malignancy of pulmonary nodules. Through the observation of CT image data, we found that for some small nodules it is impossible to extract their morphological features due to their small size. Our idea is to convert the original CT image into three different scales (Multi-scale) and input them into three parallel 3D densely-connected convolutional network (DenseN et) blocks. Finally, the extracted features from the last layer of the three networks are concatenated to classify the grade of malignancy. In this way, the morphological features of small nodules can be better obtained without affecting the feature extraction of large nodules. In this study, 1882 samples from the dataset of Lung Image Database Consortium (LID C) are used for training and testing. Overall, we achieved 68.5 % accuracy for the task of malignancy grades classification.
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三维多尺度密度成像在肺结节恶性分级中的应用
随着计算机辅助诊断(CAD)系统算法的发展,从计算机断层扫描(CT)成像数据中高精度地检测肺结节成为可能。现有的CAD系统能够自动输出具有置信度的节点位置。它可以帮助放射科医生节省结节检测工作的时间。然而,并非所有结节都会发展成肺癌。根据其恶性程度的不同,发展为肺癌的可能性也不同。判断肺结节的恶性程度主要由医生判断,并高度依赖于个人经验。为了进一步实现肺癌预后的自动化,需要一种能够准确评估肺结节恶性程度的系统。这将有助于重新评估所发现的结节,并为正确的治疗方法提供建议。恶性肿瘤分类有两种任务(1)将样本划分为良性或恶性(2)将样本划分为恶性等级(从1级到5级)。许多研究在task-1上取得了较高的准确性,但在task-2上的结果仍然很差。在这项工作中,我们提出了一个三维多尺度密度图来分类肺结节的恶性程度。通过对CT图像数据的观察,我们发现对于一些小结节,由于其体积小,无法提取其形态特征。我们的想法是将原始CT图像转换成三个不同的尺度(Multi-scale),并将其输入到三个平行的3D密集连接的卷积网络(DenseN et)块中。最后,将从三个网络的最后一层提取的特征连接起来,对恶性肿瘤的等级进行分类。这样可以在不影响大结节特征提取的前提下,更好地获取小结节的形态特征。本研究使用肺图像数据库联盟(LID C)数据集中的1882个样本进行训练和测试。总体而言,我们对恶性肿瘤分级的准确率达到了68.5%。
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