Redi: A Simulator of Stochastic Biochemical Reaction-Diffusion Systems

P. Lecca, Lorenzo Dematté, Adaoha Elizabeth Ihekwaba, C. Priami
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引用次数: 2

Abstract

We present a new model of anisotropic reaction-diffusion systems and the algorithmic framework of the software Redi (Reaction-Diffusion simulator) that implements this model. As illustrative application, we show the ability of Redi to reproduce the observed dynamics of the bicoid protein gradient in the Drosophila Melanogaster embryo.
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随机生化反应-扩散系统的模拟器
我们提出了一个新的各向异性反应扩散系统模型,以及实现该模型的软件Redi(反应扩散模拟器)的算法框架。作为示例性应用,我们展示了Redi在果蝇胚胎中重现所观察到的双头体蛋白梯度动态的能力。
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