A Framework for Validation of Network-based Simulation Models: an Application to Modeling Interventions of Pandemics

Sichao Wu, H. Mortveit, Sandeep Gupta
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引用次数: 2

Abstract

Network-based computer simulation models are powerful tools for analyzing and guiding policy formation related to the actual systems being modeled. However, the inherent data and computationally intensive nature of this model class gives rise to fundamental challenges when it comes to executing typical experimental designs. In particular this applies to model validation. Manual management of the complex simulation work-flows along with the associated data will often require a broad combination of skills and expertise. Examples of skills include domain expertise, mathematical modeling, programming, high-performance computing, statistical designs, data management as well as the tracking all assets and instances involved. This is a complex and error-prone process for the best of practices, and even small slips may compromise model validation and reduce human productivity in significant ways. In this paper, we present a novel framework that addresses the challenges of model validation just mentioned. The components of our framework form an ecosystem consisting of (i) model unification through a standardized model configuration format, (ii) simulation data management, (iii) support for experimental designs, and (iv) methods for uncertainty quantification, and sensitivity analysis, all ultimately supporting the process of model validation. (Note that our view of validation is much more comprehensive than simply ensuring that the computational model can reproduce instance of historical data.) This is an extensible design where domain experts from e.g. experimental design can contribute to the collection of available algorithms and methods. Additionally, our solution directly supports reproducible computational experiments and analysis, which in turn facilitates independent model verification and validation. Finally, to showcase our design concept, we provide a sensitivity analysis for examining the consequences of different intervention strategies for an influenza pandemic.
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基于网络的模拟模型验证框架:在流行病干预建模中的应用
基于网络的计算机仿真模型是分析和指导与被建模的实际系统相关的政策形成的强大工具。然而,当涉及到执行典型的实验设计时,这种模型类的固有数据和计算密集型性质带来了根本性的挑战。这尤其适用于模型验证。手动管理复杂的模拟工作流以及相关数据通常需要广泛的技能和专业知识组合。技能的例子包括领域专业知识、数学建模、编程、高性能计算、统计设计、数据管理以及跟踪所有涉及的资产和实例。对于最佳实践来说,这是一个复杂且容易出错的过程,即使是很小的失误也可能损害模型验证,并在很大程度上降低人类的生产力。在本文中,我们提出了一个新的框架来解决刚才提到的模型验证的挑战。我们框架的组成部分形成了一个生态系统,包括(i)通过标准化模型配置格式统一模型,(ii)模拟数据管理,(iii)支持实验设计,以及(iv)不确定性量化和敏感性分析方法,所有这些最终都支持模型验证过程。(请注意,我们对验证的看法比简单地确保计算模型能够再现历史数据实例要全面得多。)这是一个可扩展的设计,来自实验设计等领域的专家可以为可用的算法和方法的集合做出贡献。此外,我们的解决方案直接支持可重复的计算实验和分析,从而促进独立的模型验证和验证。最后,为了展示我们的设计概念,我们提供了一个敏感性分析,用于检查流感大流行不同干预策略的后果。
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