Improving Performance of Structured-Memory, Data-Intensive Applications on Multi-core Platforms via a Space-Filling Curve Memory Layout

Abstract

Many data-intensive algorithms -- particularly in visualization, image processing, and data analysis -- operate on structured data, that is, data organized in multidimensional arrays. While many of these algorithms are quite numerically intensive, by and large, their performance is limited by the cost of memory accesses. As we move towards the exascale regime of computing, one central research challenge is finding ways to minimize data movement through the memory hierarchy, particularly within a node in a shared-memory parallel setting. We study the effects that an alternative in-memory data layout format has in terms of runtime performance gains resulting from reducing the amount of data moved through the memory hierarchy. We focus the study on shared-memory parallel implementations of two algorithms common in visualization and analysis: a stencil-based convolution kernel, which uses a structured memory access pattern, and ray casting volume rendering, which uses a semi-structured memory access pattern. The question we study is to better understand to what degree an alternative memory layout, when used by these key algorithms, will result in improved runtime performance and memory system utilization. Our approach uses a layout based on a Z-order (Morton-order) space-filling curve data organization, and we measure and report runtime and various metrics and counters associated with memory system utilization. Our results show nearly uniform improved runtime performance and improved utilization of the memory hierarchy across varying levels of concurrency the applications we tested. This approach is complementary to other memory optimization strategies like cache blocking, but may also be more general and widely applicable to a diverse set of applications.