Multimodal Learning for Predicting Mortality in Patients with Pulmonary Arterial Hypertension

M. N. I. Suvon, P. C. Tripathi, S. Alabed, A. Swift, Haiping Lu
{"title":"Multimodal Learning for Predicting Mortality in Patients with Pulmonary Arterial Hypertension","authors":"M. N. I. Suvon, P. C. Tripathi, S. Alabed, A. Swift, Haiping Lu","doi":"10.1109/BIBM55620.2022.9995597","DOIUrl":null,"url":null,"abstract":"Pulmonary Arterial Hypertension (PAH) is a lifethreatening disorder. The prediction of mortality in PAH patients can play a crucial role in the clinical management of this disease. The prediction of mortality from one modality is a difficult task that may only provide limited performance. Therefore, we propose a multimodal learning approach in this work to predict one-year mortality in PAH patients. We have utilised three modalities, which include extracted numerical imaging features, echo report categorical features, and echo report text features from Electronic Health Records (EHRs) of patients. We have proposed a feature integration module to combine features from multiple modalities. The text features have been extracted from the echo reports using the Bidirectional Encoder Representations from Transformers (BERT). An attention mechanism and a weighted summation method are also adopted during the process of feature integration. We have performed different experiments to evaluate the performance of the proposed framework for mortality prediction. The experimental results indicate that we can achieve the best AUC score of 0.89 for predicting one-year mortality by combining all three modalities. The source code of this paper is available at https://github.com/Mdnaimulislam/MultimodalTab.","PeriodicalId":210337,"journal":{"name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","volume":"538 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBM55620.2022.9995597","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2

Abstract

Pulmonary Arterial Hypertension (PAH) is a lifethreatening disorder. The prediction of mortality in PAH patients can play a crucial role in the clinical management of this disease. The prediction of mortality from one modality is a difficult task that may only provide limited performance. Therefore, we propose a multimodal learning approach in this work to predict one-year mortality in PAH patients. We have utilised three modalities, which include extracted numerical imaging features, echo report categorical features, and echo report text features from Electronic Health Records (EHRs) of patients. We have proposed a feature integration module to combine features from multiple modalities. The text features have been extracted from the echo reports using the Bidirectional Encoder Representations from Transformers (BERT). An attention mechanism and a weighted summation method are also adopted during the process of feature integration. We have performed different experiments to evaluate the performance of the proposed framework for mortality prediction. The experimental results indicate that we can achieve the best AUC score of 0.89 for predicting one-year mortality by combining all three modalities. The source code of this paper is available at https://github.com/Mdnaimulislam/MultimodalTab.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
多模式学习预测肺动脉高压患者死亡率
肺动脉高压(PAH)是一种危及生命的疾病。PAH患者的死亡率预测对该病的临床治疗具有重要意义。从一种模式预测死亡率是一项困难的任务,可能只能提供有限的性能。因此,我们在这项工作中提出了一种多模式学习方法来预测PAH患者的一年死亡率。我们使用了三种模式,包括从患者的电子健康记录(EHRs)中提取的数值成像特征、回声报告分类特征和回声报告文本特征。我们提出了一个特征集成模块来组合来自多个模态的特征。文本特征是从回波报告中提取的,使用了变形金刚的双向编码器表示(BERT)。在特征整合过程中,采用了注意机制和加权求和方法。我们进行了不同的实验来评估所提出的死亡率预测框架的性能。实验结果表明,综合三种方法预测1年死亡率的最佳AUC得分为0.89。本文的源代码可从https://github.com/Mdnaimulislam/MultimodalTab获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes Secure Password Using EEG-based BrainPrint System: Unlock Smartphone Password Using Brain-Computer Interface Technology On functional annotation with gene co-expression networks ST-ChIP: Accurate prediction of spatiotemporal ChIP-seq data with recurrent neural networks Discovering the Knowledge in Unstructured Early Drug Development Data Using NLP and Advanced Analytics
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1