Quantification of Type III Collagen Deposition Density from Photomicrograph of Vaginal Connective Tissue

Muhammad Arfan, H. Zakaria
{"title":"Quantification of Type III Collagen Deposition Density from Photomicrograph of Vaginal Connective Tissue","authors":"Muhammad Arfan, H. Zakaria","doi":"10.1109/IBIOMED56408.2022.9988366","DOIUrl":null,"url":null,"abstract":"Visualization has always aided clinical trial diagnoses. The majority of observations are, unfortunately, performed manually. Repeatability, samples, and effort are necessary for quantitative research. More samples complicate the process. A density study of type III collagen deposition was manually performed on 105 samples using ImageJ on photomicrographs by adjusting the deposition color in a binary image. Manually examining photomicrographs for collagen fiber density is time-consuming and tiring. This study automatically quantifies the type III collagen deposition density using CellProfiler, which does not require skill in observing large samples and complex research obj ects, thus enabling a less time-consuming technique. This study equalizes illumination and reduces photomicrograph noise to help identify cells. The line and tubeness features are improved to enhance the pixel intensity and collagen fiber structure. CellProfiler processed 105 photos in eight minutes, 57 seconds, or 5,1 seconds each. ImageJ required 114 seconds per photomicrograph or 129,5 minutes total (depending on the accuracy of the researchers). CellProfiler accelerated image processing by 14,5 times. Comparing the calculations of CellProfiler and ImageJ using linear regression yielded R2 = 0,7786, indicating a strong relationship. In addition, it produced the equation y = 0.9548x + 1.2197, indicating a positive correlation. This strong relationship and positive correlation suggested that CellProfiler's automatic quantification could assist researchers in measuring complex cells like collagen fiber structure in a less time-consuming technique.","PeriodicalId":250112,"journal":{"name":"2022 4th International Conference on Biomedical Engineering (IBIOMED)","volume":"2 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2022 4th International Conference on Biomedical Engineering (IBIOMED)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/IBIOMED56408.2022.9988366","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Visualization has always aided clinical trial diagnoses. The majority of observations are, unfortunately, performed manually. Repeatability, samples, and effort are necessary for quantitative research. More samples complicate the process. A density study of type III collagen deposition was manually performed on 105 samples using ImageJ on photomicrographs by adjusting the deposition color in a binary image. Manually examining photomicrographs for collagen fiber density is time-consuming and tiring. This study automatically quantifies the type III collagen deposition density using CellProfiler, which does not require skill in observing large samples and complex research obj ects, thus enabling a less time-consuming technique. This study equalizes illumination and reduces photomicrograph noise to help identify cells. The line and tubeness features are improved to enhance the pixel intensity and collagen fiber structure. CellProfiler processed 105 photos in eight minutes, 57 seconds, or 5,1 seconds each. ImageJ required 114 seconds per photomicrograph or 129,5 minutes total (depending on the accuracy of the researchers). CellProfiler accelerated image processing by 14,5 times. Comparing the calculations of CellProfiler and ImageJ using linear regression yielded R2 = 0,7786, indicating a strong relationship. In addition, it produced the equation y = 0.9548x + 1.2197, indicating a positive correlation. This strong relationship and positive correlation suggested that CellProfiler's automatic quantification could assist researchers in measuring complex cells like collagen fiber structure in a less time-consuming technique.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
阴道结缔组织显微照片中III型胶原沉积密度的定量测定
可视化一直有助于临床试验诊断。不幸的是,大多数观察都是手动执行的。可重复性、样品和努力是定量研究的必要条件。更多的样本使这一过程复杂化。通过调整二值图像中的沉积颜色,使用ImageJ对105个样品进行了III型胶原沉积的密度研究。人工检查显微照片中的胶原纤维密度既费时又累人。本研究使用CellProfiler自动定量III型胶原沉积密度,不需要观察大样本和复杂研究对象的技能,从而节省了时间。这项研究平衡光照和减少显微照片噪声,以帮助识别细胞。改进了线条和管状特征,增强了像素强度和胶原纤维结构。CellProfiler在8分57秒内处理了105张照片,即每张5.1秒。ImageJ每张显微照片需要114秒,或者总共需要129.5分钟(取决于研究人员的准确性)。CellProfiler将图像处理速度提高了14.5倍。使用线性回归比较CellProfiler和ImageJ的计算结果得出R2 = 0,7786,表明两者之间存在很强的关系。此外,它产生了方程y = 0.9548x + 1.2197,表明正相关。这种强相关性和正相关性表明,CellProfiler的自动定量可以帮助研究人员以更少的时间来测量复杂的细胞,如胶原纤维结构。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
IoT Based Pre-Operative Prehabilitation Program Monitoring Model: Implementation and Preliminary Evaluation Detecting Pregnancy Risk Type Using LSTM Algorithm Review of Brain MRI Image Segmentation Based on Deep Learning Method VaderLogRest Algorithm: An Ensemble Learning Approach for Sentiment Analysis on Vaccination Tweets Image Enhancement Techniques on Chest X-Ray Images to Improve COVID-19 Detection
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1