Quantum Chemical Many-Body Theory on Heterogeneous Nodes

A. Eugene DePrince III, J. Hammond
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引用次数: 4

Abstract

The iterative solution of the coupled-cluster with single and double excitations (CCSD) equations is a very time-consuming component of the ``gold standard'' in quantum chemistry, the CCSD(T) method. In an effort to accelerate accurate quantum mechanical calculations, we explore two implementation strategies for the iterative solution of the CC equations on graphics procesing units (GPUs). We consider a communication-avoiding algorithm for the spin-free coupled cluster doubles (CCD) equations followed by a low-storage algorithm for the spin-free CCSD equations. In the communication-avoiding algorithm, the entire iterative procedure for the CCD method is performed on the GPU, resulting in accelerations of a factor of 4-5 relative to the pure CPU algorithm. The low-storage CCSD algorithm requires that a minimum of $4o^2v^2+2ov$ elements be stored on the device, where $o$ and $v$ represent the number of orbitals occupied and unoccupied in the reference configuration, respectively. The algorithm masks the transfer time for copying large amounts of data to the GPU by overlapping GPU and CPU computations. The per-iteration costs of this hybrid GPU/CPU algorithm are up to 4.06 times less than those of the pure CPU algorithm and up to 10.63 times less than those of the CCSD implementation found in the {\small Molpro} electronic structure package. These results provide insight into how to organize communication and computation as to maximize utilization of a GPU and multicore CPU at the same time.
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非均相节点的量子化学多体理论
单激发和双激发耦合簇(CCSD)方程的迭代求解是量子化学“金标准”CCSD(T)方法中非常耗时的一个组成部分。为了加速精确的量子力学计算,我们探索了在图形处理单元(gpu)上迭代求解CC方程的两种实现策略。我们考虑了一种无自旋耦合簇双元(CCD)方程的通信避免算法,以及一种无自旋耦合簇双元(CCSD)方程的低存储算法。在通信避免算法中,CCD方法的整个迭代过程都是在GPU上进行的,相对于纯CPU算法,其加速度是4-5倍。低存储CCSD算法要求在器件上存储至少$ 40 ^2v^2+ 2v $个元素,其中$ 0 $和$v$分别表示参考构型中已占用和未占用的轨道数。该算法通过GPU和CPU计算的重叠来掩盖将大量数据复制到GPU的传输时间。这种GPU/CPU混合算法的每次迭代成本比纯CPU算法低4.06倍,比{\small Molpro}电子结构包中的CCSD实现低10.63倍。这些结果提供了如何组织通信和计算的洞察力,以最大限度地利用GPU和多核CPU在同一时间。
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