Inferring method of the gene regulatory networks using neural networks adopting a majority rule

Yasuki Hirai, M. Kikuchi, H. Kurokawa
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引用次数: 2

Abstract

The regulatory interaction between gene expressions is considered as a universal mechanism in biological systems and such a mechanism of interactions has been modeled as gene regulatory networks. The gene regulatory networks show a correlation among gene expressions. A lot of methods to describe the gene regulatory network have been developed. Especially, owing to the technologies such as DNA microarrays that provide a number of time course data of gene expressions, the gene regulatory network models described by differential equations have been proposed and developed in recently. To infer such a gene regulatory network using differential equations, it is necessary to approximate many unknown functions from the time course data of gene expressions that is obtained experimentally. One of the successful inference methods of the gene regulatory networks is the method using the neural network. In this study, to improve a performance of the inference, we propose the inferring method of the gene regulatory networks using neural networks adopting a kind of majority rule. Simulation results show the validity of the proposed method.
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采用多数决原则的神经网络基因调控网络的推理方法
基因表达之间的调控相互作用被认为是生物系统中的普遍机制,这种相互作用机制已被建模为基因调控网络。基因调控网络显示出基因表达之间的相关性。人们已经发展了许多描述基因调控网络的方法。特别是由于DNA微阵列等技术提供了大量基因表达的时间过程数据,近年来提出并发展了用微分方程描述的基因调控网络模型。要用微分方程推断出这样一个基因调控网络,需要从实验得到的基因表达的时间过程数据中近似出许多未知的函数。利用神经网络对基因调控网络进行推理是目前较为成功的方法之一。在本研究中,为了提高推理的性能,我们提出了一种采用多数决原则的神经网络基因调控网络的推理方法。仿真结果表明了该方法的有效性。
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