The immunomodulatory activity of Orthosiphon aristatus against atopic dermatitis: Evidence-based on network pharmacology and molecular simulations

IF 1.5 Q2 MEDICINE, GENERAL & INTERNAL Journal of Taibah University Medical Sciences Pub Date : 2023-11-04 DOI:10.1016/j.jtumed.2023.10.005
Thigita A. Pandaleke M.D. , Kusworini Handono Ph.D. , Dhelya Widasmara Ph.D. , Hani Susianti Ph.D.
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Abstract

Objectives

To explore the potential activity of Orthosiphon aristatus (OA) against atopic dermatitis (AD).

Methods

Phytocompounds from OA were identified through chromatography analysis, then continued to target identification and functional annotation to explore the potential target of OA. Then, network pharmacology from annotated proteins determined protein targets for OA phytocompounds. Protein with highest rank according to the betweenness and closeness algorithm then continued to molecular docking and validated through molecular dynamics analysis.

Results

Chromatography data analysis revealed thirty-six compounds, predominantly classified as carboxylic acid, fatty acyls, and polyphenols. Upon identifying these compounds, network biology-based target identification revealed their potential bioactivity in modulating inflammation in AD. Tumour Necrosis Factor-alpha (TNF-α) and Prostaglandin G/H synthase 2 (PTGS2) emerged as the most probable targets based on hub centrality in the protein–protein interaction network. Later, molecular docking analyses highlighted sixteen compounds with good inhibitory activity against these two proteins. Notably, molecular dynamics simulation revealed that three compounds out of the previous sixteen potential compounds were more likely to act as the TNF-α and PTGS2 inhibitor as well as their native inhibitor. Those compounds are (1R,9R)-5-Cyclohexyl-11- (propylsulfonyl)-7,11- diazatricyclo[7.3.1.02,7]trideca- 2,4-dien-6-one, also known as ZINC8297940, as the best TNF-α inhibitor along with dl-Leucineamide and Benazol P as the potential inhibitor of PTGS2.

Conclusions

These findings suggest that OA may exert therapeutic effects against AD by controlling inflammation through TNF-α and PTGS2 signalling pathways.

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正虹吸对特应性皮炎的免疫调节作用:基于网络药理学和分子模拟的证据
目的探讨坐骨直虹吸(OA)对特应性皮炎(AD)的潜在治疗作用。方法通过色谱分析对OA中的植物化合物进行鉴定,并继续进行靶点鉴定和功能标注,探索OA的潜在靶点。然后,通过注释蛋白的网络药理学确定OA植物化合物的蛋白靶点。然后根据中间度和接近度算法获得排名最高的蛋白继续进行分子对接,并通过分子动力学分析进行验证。结果色谱数据分析发现36种化合物,主要为羧酸、脂肪酰基和多酚类。在鉴定这些化合物后,基于网络生物学的靶标鉴定揭示了它们在调节AD炎症中的潜在生物活性。肿瘤坏死因子-α (TNF-α)和前列腺素G/H合成酶2 (PTGS2)基于蛋白-蛋白相互作用网络的中心性而成为最有可能的靶点。随后,分子对接分析发现了16种对这两种蛋白具有良好抑制活性的化合物。值得注意的是,分子动力学模拟显示,在之前的16种潜在化合物中,有3种化合物更有可能作为TNF-α和PTGS2抑制剂及其天然抑制剂。这些化合物是(1R,9R)-5-环己基-11-(丙基磺酰基)-7,11-二氮杂环[7.3.1.02,7]trideca- 2,4-二烯-6-one,也称为ZINC8297940,是最好的TNF-α抑制剂,dl-亮氨酸酰胺和Benazol P是PTGS2的潜在抑制剂。结论OA可能通过TNF-α和PTGS2信号通路控制炎症,从而发挥治疗AD的作用。
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来源期刊
Journal of Taibah University Medical Sciences
Journal of Taibah University Medical Sciences MEDICINE, GENERAL & INTERNAL-
CiteScore
3.40
自引率
4.50%
发文量
130
审稿时长
29 days
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