Towards a dynamic checklist of lichen-forming, lichenicolous and allied fungi of Ecuador – using the Consortium of Lichen Herbaria to manage fungal biodiversity in a megadiverse country

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-09-01 DOI:10.1017/s0024282923000476
Alba Yánez-Ayabaca, Ángel Benítez, Rosa Batallas Molina, Domenica Naranjo, Javier Etayo, María Prieto, Gabriela Cevallos, Erika Caicedo, Klara Scharnagl, Britton McNerlin, Santiago Swanson, Gregorio Aragón, Noelia Fernández-Prado, Isabel Martínez, Ana Rosa Burgaz, Yadira González, Jorge Déleg, Marlon Vega, Pieter van den Boom, Nicolas Magain, Fredy Nugra, Tania Oña, Patricia Jaramillo Díaz, Justine Villalba-Alemán, Bibiana Moncada, Jesús Hernández, Edward Erik Gilbert, Frank Bungartz
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Abstract

Abstract A checklist of Lichen-forming, Lichenicolous and Allied Fungi of Ecuador is presented with a total of 2599 species, of which 39 are reported for the first time from the country. The names of three species, Hypotrachyna montufariensis , H. subpartita and Sticta hypoglabra , previously not validly published, are validated. Pertusaria oahuensis , originally introduced by Magnusson as ‘ ad interim ’, is validated as Lepra oahuensis . The form Leucodermia leucomelos f. albociliata is validated. Two new combinations, Fissurina tectigera and F. timida , are made, and Physcia mobergii is introduced as a replacement name for the illegitimate P. lobulata Moberg non (Flörke) Arnold. In an initial step, the checklist was compiled by reviewing literature records of Ecuadorian lichen biota spanning from the late 19th century to the present day. Subsequently, records were added based on vouchers from 56 collections participating in the Consortium of Lichen Herbaria , a Symbiota-based biodiversity platform with particular focus on, but not exclusive to, North and South America. Symbiota provides sophisticated tools to manage biodiversity data, such as occurrence records, a taxonomic thesaurus, and checklists. The thesaurus keeps track of frequently changing names, distinguishing taxa currently accepted from ones considered synonyms. The software also provides tools to create and manage checklists, with an emphasis on selecting vouchers based on occurrence records that can be verified for identification accuracy. Advantages and limitations of creating checklists in Symbiota versus traditional ways of compiling these lists are discussed. Traditional checklists are well suited to document current knowledge as a ‘snapshot in time’. They are important baselines, frequently used by ecologists and conservation scientists as an established naming convention for citing species reported from a country. Compiling these lists, however, requires an immense effort, only to inadequately address the dynamic nature of scientific discovery. Traditional checklists are thus quickly out of date, particularly in groups with rapidly changing taxonomy, such as lichenized fungi. Especially in megadiverse countries, where new species and new occurrences continue to be discovered, traditional checklists are not easily updated; these lists necessarily fall short of efficiently managing immense data sets, and they rely primarily on secondary evidence (i.e. literature records rather than specimens). Ideally, best practices make use of dynamic database platforms such as Symbiota to assess occurrence records based both on literature citations and voucher specimens. Using modern data management tools comes with a learning curve. Systems like Symbiota are not necessarily intuitive and their functionality can still be improved, especially when handling literature records. However, online biodiversity data platforms have much potential in more efficiently managing and assessing large biodiversity data sets, particularly when investigating the lichen biota of megadiverse countries such as Ecuador.
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建立厄瓜多尔地衣形成真菌、地衣类真菌和相关真菌的动态清单——利用地衣标本馆联盟在一个生物多样性巨大的国家管理真菌生物多样性
摘要整理了厄瓜多尔地衣形成真菌、地衣科真菌及相关真菌的名录,共发现2599种,其中39种为首次报道。三个物种的名称,Hypotrachyna montufariensis, H. subpartita和Sticta hypoglabra,以前没有有效发表,现在得到了验证。瓦胡百日咳(Pertusaria oahuensis),最初由Magnusson作为“临时”引入,现在被确认为Lepra oahuensis。证实了白僵菌的形态。两个新的组合,Fissurina tectigera和F. timida,和physia mobergii被引入作为非法P. lobulata Moberg non (Flörke) Arnold的替代名称。在最初的步骤中,通过回顾从19世纪末到现在厄瓜多尔地衣生物群的文献记录,编制了清单。随后,根据参与地衣标本馆联合会的56个标本的代金券添加了记录。地衣标本馆联合会是一个以共生体为基础的生物多样性平台,特别关注北美和南美,但并不仅限于北美和南美。Symbiota提供了复杂的工具来管理生物多样性数据,如发生记录、分类词典和清单。同义词典跟踪频繁变化的名称,区分当前接受的分类群和被认为是同义词的分类群。该软件还提供了创建和管理检查清单的工具,重点是根据可以验证识别准确性的发生记录选择凭证。讨论了在Symbiota中创建清单与传统编制清单方法相比的优点和局限性。传统的检查表非常适合将当前知识作为“及时快照”记录下来。它们是重要的基线,经常被生态学家和自然保护科学家用作引用一个国家报告的物种的既定命名惯例。然而,编制这些清单需要付出巨大的努力,只是不足以说明科学发现的动态本质。因此,传统的清单很快就过时了,特别是在分类法快速变化的群体中,比如地衣真菌。特别是在生物多样性巨大的国家,新物种和新现象不断被发现,传统的清单不容易更新;这些清单必然无法有效管理庞大的数据集,而且它们主要依赖于次要证据(即文献记录而不是标本)。理想情况下,最佳实践是利用Symbiota等动态数据库平台来评估基于文献引用和凭证样本的事件记录。使用现代数据管理工具需要一个学习曲线。像Symbiota这样的系统并不一定是直观的,它们的功能仍然可以改进,特别是在处理文学记录时。然而,在线生物多样性数据平台在更有效地管理和评估大型生物多样性数据集方面具有很大的潜力,特别是在调查厄瓜多尔等生物多样性大国的地衣生物群时。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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