SRSF7 is a promising prognostic biomarker in hepatocellular carcinoma and is associated with immune infiltration.

IF 1.7 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Genes & genomics Pub Date : 2024-01-01 Epub Date: 2023-11-20 DOI:10.1007/s13258-023-01463-w
Wei Shen, Lebin Yuan, Fei Cheng, Zhao Wu, Xiaodong Li
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Abstract

Background: Previous studies indicate that the splicing process, regulated by the cellular machinery of tumors (spliceosome), undergoes alterations, leading to oncogenic splicing events associated with the progression of tumors towards aggressiveness. However, the role of serine/arginine-rich splicing factor 7 (SRSF7) in hepatocellular carcinoma (HCC) and the tumor microenvironment (TME) remains unclear.

Methods: This study was aimed to explore the role and clinical significance of SRSF7 in HCC. By conducting functional analysis and gene set enrichment analysis, it was discovered that SRSF7 contributes to multiple pathways associated with immune response and tumor advancement. Further experiments verified that silencing of SRSF7 obviously inhibits progression of HCC.

Results: Aberrant expression of SRSF7, which were referred as an independent prognostic risk factor, effectively predicts the prognosis of patients with HCC. Functional and gene enrichment analyses revealed that SRSF7 is linked with multiple immune and tumor progression-related pathways, including the B cell receptor signaling pathway, positive regulation of leukocyte and immunoglobulin receptor binding cell activation, nuclear division, membrane invagination, cell cycle, as well as mTOR signaling pathway. Furthermore, increased SRSF7 expression was associated with tumor-infiltrating inflammatory cells (CD4+, monocytes/macrophages, CD8 + and endothelial). Additionally, multiple immune checkpoint genes were markedly positively related to SRSF7. The efficiency of SRSF7 in predicting immunomodulator and chemokine responses were also assessed in microenvironment. Moreover, in vitro analyses demonstrated that knockdown of SRSF7 suppressed the malignant evolution of HCC possibly by deactivating the PI3K/AKT/mTOR signaling.

Conclusion: The role of SRSF7 in the tumor microenvironment has been successfully assessed. It may be a valid bio-index for predicting the HCC prognosis, thereby guiding individualized immunotherapy for cancer.

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SRSF7是一种很有前景的肝细胞癌预后生物标志物,与免疫浸润有关。
背景:先前的研究表明,剪接过程受肿瘤细胞机制(剪接体)的调节,发生改变,导致与肿瘤向侵袭性发展相关的致癌剪接事件。然而,富丝氨酸/精氨酸剪接因子7 (SRSF7)在肝细胞癌(HCC)和肿瘤微环境(TME)中的作用尚不清楚。方法:探讨SRSF7在HCC中的作用及临床意义。通过功能分析和基因集富集分析,发现SRSF7参与免疫应答和肿瘤进展的多种途径。进一步的实验证实,沉默SRSF7可明显抑制HCC的进展。结果:SRSF7的异常表达可有效预测HCC患者的预后,是独立的预后危险因素。功能和基因富集分析显示,SRSF7与多种免疫和肿瘤进展相关通路相关,包括B细胞受体信号通路、白细胞和免疫球蛋白受体结合细胞活化的正调控、核分裂、膜内陷、细胞周期以及mTOR信号通路。此外,SRSF7表达增加与肿瘤浸润性炎症细胞(CD4+、单核/巨噬细胞、CD8 +和内皮细胞)有关。此外,多个免疫检查点基因与SRSF7呈显著正相关。我们还在微环境中评估了SRSF7预测免疫调节剂和趋化因子反应的效率。此外,体外分析表明,敲低SRSF7可能通过使PI3K/AKT/mTOR信号失活来抑制HCC的恶性演变。结论:成功评估了SRSF7在肿瘤微环境中的作用。它可能是预测HCC预后的有效生物指标,从而指导癌症的个体化免疫治疗。
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来源期刊
Genes & genomics
Genes & genomics 生物-生化与分子生物学
CiteScore
3.70
自引率
4.80%
发文量
131
审稿时长
6-12 weeks
期刊介绍: Genes & Genomics is an official journal of the Korean Genetics Society (http://kgenetics.or.kr/). Although it is an official publication of the Genetics Society of Korea, membership of the Society is not required for contributors. It is a peer-reviewed international journal publishing print (ISSN 1976-9571) and online version (E-ISSN 2092-9293). It covers all disciplines of genetics and genomics from prokaryotes to eukaryotes from fundamental heredity to molecular aspects. The articles can be reviews, research articles, and short communications.
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