Cross-Platform Application of DNA Methylation Age Estimation Model in Eastern Chinese Han Population.

Zi-Wei Wang, Cheng-Tao Li, Xi-Ling Liu
{"title":"Cross-Platform Application of DNA Methylation Age Estimation Model in Eastern Chinese Han Population.","authors":"Zi-Wei Wang, Cheng-Tao Li, Xi-Ling Liu","doi":"10.12116/j.issn.1004-5619.2022.520405","DOIUrl":null,"url":null,"abstract":"<p><strong>Objectives: </strong>To evaluate the forensic application value of an age estimation model based on DNA methylation in eastern Chinese Han population, and to provide a theoretical basis for exploring age estimation models suitable for different detection platforms.</p><p><strong>Methods: </strong>According to the 6 age-related methylation sites in the published blood DNA methylation age estimation models of Chinese Han population, the DNA methylation level of 48 samples was detected by pyrosequencing and next-generation sequencing (NGS). After submitting DNA methylation levels to the age estimation model, the DNA methylation ages were predicted and compared with their real ages.</p><p><strong>Results: </strong>The 6 DNA methylation sites in both detection techniques were age-related, with an <i>R</i><sup>2</sup> of 0.85 and a median absolute deviation (MAD) of 4.81 years when using pyrosequencing;with an <i>R</i><sup>2</sup> of 0.84 and MAD of 4.41 years when using NGS.</p><p><strong>Conclusions: </strong>The blood DNA methylation age estimation model can be used under pyrosequencing and multi-purpose regional methylation enrichment sequencing technology based on NGS and it can accurately estimate the age.</p>","PeriodicalId":15899,"journal":{"name":"Journal of Forensic Medicine","volume":"39 5","pages":"441-446"},"PeriodicalIF":0.0000,"publicationDate":"2023-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Forensic Medicine","FirstCategoryId":"90","ListUrlMain":"https://doi.org/10.12116/j.issn.1004-5619.2022.520405","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Objectives: To evaluate the forensic application value of an age estimation model based on DNA methylation in eastern Chinese Han population, and to provide a theoretical basis for exploring age estimation models suitable for different detection platforms.

Methods: According to the 6 age-related methylation sites in the published blood DNA methylation age estimation models of Chinese Han population, the DNA methylation level of 48 samples was detected by pyrosequencing and next-generation sequencing (NGS). After submitting DNA methylation levels to the age estimation model, the DNA methylation ages were predicted and compared with their real ages.

Results: The 6 DNA methylation sites in both detection techniques were age-related, with an R2 of 0.85 and a median absolute deviation (MAD) of 4.81 years when using pyrosequencing;with an R2 of 0.84 and MAD of 4.41 years when using NGS.

Conclusions: The blood DNA methylation age estimation model can be used under pyrosequencing and multi-purpose regional methylation enrichment sequencing technology based on NGS and it can accurately estimate the age.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
DNA甲基化年龄估计模型在中国东部汉族人群中的跨平台应用
目的:评价基于DNA甲基化的中国东部汉族人群年龄估计模型的法医应用价值,为探索适合不同检测平台的年龄估计模型提供理论依据。方法:根据已发表的中国汉族人群血液DNA甲基化年龄估计模型中6个与年龄相关的甲基化位点,采用焦磷酸测序和下一代测序(NGS)检测48份样本的DNA甲基化水平。将DNA甲基化水平提交给年龄估计模型后,预测DNA甲基化年龄并将其与实际年龄进行比较。结果:两种检测技术的6个DNA甲基化位点均与年龄相关,使用焦磷酸测序时,R2为0.85,中位绝对偏差(MAD)为4.81年;使用NGS时,R2为0.84,MAD为4.41年。结论:基于NGS的焦磷酸测序和多用途区域甲基化富集测序技术下的血液DNA甲基化年龄估计模型能够准确估计年龄。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊介绍:
期刊最新文献
[Traffic accident caused by acute attack of Hashimoto encephalopathy: A case report]. [Death due to asphyxia after tracheotomy: Two case reports]. [Death due to gastric perforation caused by congenital defect of gastric musculature in a toddler: A case report]. [eath from rupture of penetrating atherosclerotic ulcer of thoracic aorta:A case report]. [Forensic identification of death after BiGu: A case report].
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1