Identification and Immune Characteristics Study of Pyroptosis‑Related Genes in Endometriosis.

IF 2.1 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochemical Genetics Pub Date : 2024-08-01 Epub Date: 2023-11-29 DOI:10.1007/s10528-023-10583-7
Zhe Su, Wenjing Su, Chenglong Li, Peihui Ding, Kaixue Lao, Yiqian Li, Yanlin Wang
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Abstract

Endometriosis (EMT) is a prevalent gynecological disorder characterized by pain and infertility associated with the menstrual cycle. Pyroptosis, an emerging cell death mechanism, has been implicated in the pathogenesis of diverse diseases, highlighting its pivotal role in disease progression. Therefore, our study aimed to investigate the impact of pyroptosis in EMT using a comprehensive bioinformatics approach. We initially obtained two datasets from the Gene Expression Omnibus database and performed differential expression analysis to identify pyroptosis-related genes (PRGs) that were differentially expressed between EMT and non-EMT samples. Subsequently, several machine learning algorithms, namely least absolute shrinkage selection operator regression, support vector machine-recursive feature elimination, and random forest algorithms were used to identify a hub gene to construct an effective diagnostic model for EMT. Receiver operating characteristic curve analysis, nomogram, calibration curve, and decision curve analysis were applied to validate the performance of the model. Based on the selected hub gene, differential expression analysis between high- and low-expression groups was conducted to explore the functions and signaling pathways related to it. Additionally, the correlation between the hub gene and immune cells was investigated to gain insights into the immune microenvironment of EMT. Finally, a pyroptosis-related competing endogenous RNA network was constructed to elucidate the regulatory interactions of the hub gene. Our study revealed the potential contribution of a specific PRG to the pathogenesis of EMT, providing a novel perspective for clinical diagnosis and treatment of EMT.

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子宫内膜异位症热亡相关基因的鉴定及免疫特性研究。
子宫内膜异位症(EMT)是一种常见的妇科疾病,其特征是与月经周期相关的疼痛和不孕。焦亡是一种新兴的细胞死亡机制,与多种疾病的发病机制有关,在疾病进展中发挥着关键作用。因此,我们的研究旨在利用综合生物信息学方法研究焦亡对EMT的影响。我们首先从基因表达Omnibus数据库中获得了两个数据集,并进行了差异表达分析,以确定在EMT和非EMT样本中差异表达的热腐相关基因(PRGs)。随后,采用最小绝对收缩选择算子回归、支持向量机递归特征消除和随机森林算法等机器学习算法对枢纽基因进行识别,构建有效的EMT诊断模型。采用受试者工作特征曲线分析、nomogram、校准曲线和决策曲线分析验证模型的性能。在筛选到的hub基因基础上,进行高表达组和低表达组之间的差异表达分析,探讨其相关功能和信号通路。此外,我们还研究了hub基因与免疫细胞之间的相关性,以深入了解EMT的免疫微环境。最后,构建了一个与热降解相关的竞争内源RNA网络来阐明枢纽基因的调控相互作用。我们的研究揭示了特定PRG在EMT发病机制中的潜在作用,为EMT的临床诊断和治疗提供了新的视角。
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来源期刊
Biochemical Genetics
Biochemical Genetics 生物-生化与分子生物学
CiteScore
3.90
自引率
0.00%
发文量
133
审稿时长
4.8 months
期刊介绍: Biochemical Genetics welcomes original manuscripts that address and test clear scientific hypotheses, are directed to a broad scientific audience, and clearly contribute to the advancement of the field through the use of sound sampling or experimental design, reliable analytical methodologies and robust statistical analyses. Although studies focusing on particular regions and target organisms are welcome, it is not the journal’s goal to publish essentially descriptive studies that provide results with narrow applicability, or are based on very small samples or pseudoreplication. Rather, Biochemical Genetics welcomes review articles that go beyond summarizing previous publications and create added value through the systematic analysis and critique of the current state of knowledge or by conducting meta-analyses. Methodological articles are also within the scope of Biological Genetics, particularly when new laboratory techniques or computational approaches are fully described and thoroughly compared with the existing benchmark methods. Biochemical Genetics welcomes articles on the following topics: Genomics; Proteomics; Population genetics; Phylogenetics; Metagenomics; Microbial genetics; Genetics and evolution of wild and cultivated plants; Animal genetics and evolution; Human genetics and evolution; Genetic disorders; Genetic markers of diseases; Gene technology and therapy; Experimental and analytical methods; Statistical and computational methods.
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