Integrative proteogenomics study identifies the indirect effect of circulating proteins on 8 diseases via telomere length

Shifang Li, Meijiao Gong
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Abstract

Growing evidence has revealed the associations between telomere length and diseases; however, the mechanisms behind these links are not fully understood. In this study, by applying proteome-wide Mendelian randomisation (MR), multiple sensitivity analyses, colocalization, single-cell RNA-sequencing, and mediation analysis, the potential mechanisms that link 4,907 plasma proteins, telomere length, and 8 diseases were identified. Following MR analysis for the effects of plasma protein levels on telomere length, 34 proteins were found to be causally related to telomere length. Among these, 8 proteins (PSMB4, PARP1, GDI2, MAX, GMPR2, ARPC1B, ATOX1, and NUDT5) were found to be well colocalized with telomere length (posterior probability >80%). 21 mediation pairs were revealed for the indirect effect of circulating proteins on 8 diseases via telomere length. Furthermore, 35 proteins, including CD8A, were found to be influenced by telomere length among 4,907 proteins. No significant mediation pairs for circulating proteins that mediate the effects of telomere length on disease have been identified. Overall, our study provided insights into understanding the biology of telomeres and prioritized the identified proteins as prospective intervention targets for the disease.
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综合蛋白质组学研究发现循环蛋白质通过端粒长度对 8 种疾病产生间接影响
越来越多的证据揭示了端粒长度与疾病之间的联系;然而,这些联系背后的机制尚未完全明了。在这项研究中,通过应用全蛋白质组孟德尔随机化(MR)、多重敏感性分析、共聚焦、单细胞 RNA 测序和中介分析,确定了 4907 种血浆蛋白质、端粒长度和 8 种疾病之间的潜在关联机制。在对血浆蛋白水平对端粒长度的影响进行MR分析后,发现34种蛋白与端粒长度有因果关系。其中,8 种蛋白质(PSMB4、PARP1、GDI2、MAX、GMPR2、ARPC1B、ATOX1 和 NUDT5)与端粒长度有很好的共定位关系(后验概率为 80%)。通过端粒长度发现了循环蛋白对 8 种疾病的间接影响的 21 个中介对。此外,在 4907 种蛋白质中,发现包括 CD8A 在内的 35 种蛋白质受到端粒长度的影响。没有发现循环蛋白对端粒长度对疾病的影响有明显的中介作用。总之,我们的研究为了解端粒的生物学特性提供了深入的见解,并将已确定的蛋白质优先作为疾病的前瞻性干预目标。
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