Balanced Epigenetic Regulation of MHC Class I Expression in Tumor Cells by the Histone Ubiquitin Modifiers BAP1 and PCGF1

Ruud H. Wijdeven, Sietse J. Luk, Tom A. W. Schoufour, Sabina Y. van der Zanden, Marta Cabezuelo, Mirjam H. M. Heemskerk, Jacques Neefjes
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Abstract MHC class I (MHC-I) molecules are critical for CD8+ T cell responses to viral infections and malignant cells, and tumors can downregulate MHC-I expression to promote immune evasion. In this study, using a genome-wide CRISPR screen on a human melanoma cell line, we identified the polycomb repressive complex 1 (PRC1) subunit PCGF1 and the deubiquitinating enzyme BAP1 as opposite regulators of MHC-I transcription. PCGF1 facilitates deposition of ubiquitin at H2AK119 at the MHC-I promoters to silence MHC-I, whereas BAP1 removes this modification to restore MHC-I expression. PCGF1 is widely expressed in tumors and its depletion increased MHC-I expression in multiple tumor lines, including MHC-Ilow tumors. In cells characterized by poor MHC-I expression, PRC1 and PRC2 act in parallel to impinge low transcription. However, PCGF1 depletion was sufficient to increase MHC-I expression and restore T cell–mediated killing of the tumor cells. Taken together, our data provide an additional layer of regulation of MHC-I expression in tumors: epigenetic silencing by PRC1 subunit PCGF1.
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组蛋白泛素修饰因子 BAP1 和 PCGF1 对肿瘤细胞中 MHC I 类表达的表观遗传学平衡调控
MHC I类(MHC-I)分子是CD8+ T细胞对病毒感染和恶性细胞应答的关键分子,肿瘤可下调MHC-I表达以促进免疫逃避。在这项研究中,使用全基因组CRISPR筛选人类黑色素瘤细胞系,我们发现多梳抑制复合体1 (PRC1)亚基PCGF1和去泛素化酶BAP1是mhc - 1转录的相反调节因子。PCGF1促进H2AK119上泛素在MHC-I启动子上的沉积以沉默MHC-I,而BAP1则去除这一修饰以恢复MHC-I的表达。PCGF1在肿瘤中广泛表达,其缺失增加了包括MHC-Ilow肿瘤在内的多种肿瘤系中MHC-I的表达。在MHC-I表达差的细胞中,PRC1和PRC2平行于撞击低转录。然而,PCGF1的缺失足以增加MHC-I的表达,并恢复T细胞介导的肿瘤细胞杀伤。综上所述,我们的数据提供了肿瘤中MHC-I表达的另一层调控:PRC1亚基PCGF1的表观遗传沉默。
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