Phytochemicals as potential inhibitors of interleukin-8 for anticancer therapy: in silico evaluation and molecular dynamics analysis.

IF 2.4 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular Structure & Dynamics Pub Date : 2025-04-01 Epub Date: 2023-12-20 DOI:10.1080/07391102.2023.2294387
Mohammad Y Alshahrani, Ali Gaithan Alkhathami, Mohammad Ali Abdullah Almoyad, Mohammad Zaki Ahmad, Sourav Mohanto, Wasim Ahmad, Shadma Wahab
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Abstract

Within the realm of soluble factors that have emerged as potential targets for therapeutic intervention, the chemokine interleukin-8 (IL-8) has garnered attention as a potential contributor to treatment responses in various cancer types. The utilization of naturally occurring anticancer compounds for treating cancer patients has shown substantial advancements in survival rates across early and advanced stages of the disease. In silico research findings provide support for the application of phytochemicals as potential inhibitors of IL-8, and phytochemicals exhibiting a high binding free energy and crucial interactions display promising anticancer properties, positioning them as candidates for future drug development. Noteworthy phytochemicals such as IMPHY006634 (Isohydnocarpin), IMPHY007957 (Chitranone) and IMPHY013015 (1-Hydroxyrutaecarpine) were predicted to possess inhibitory activity against IL-8, with calculated energies ranging from -9.9 to -9.1 kcal/mol, respectively. Several hydrogen bonds, including common amino acid residues Lys9 and CYS48, were identified. Molecular dynamics calculations conducted on these potent inhibitors demonstrated their stability throughout a 200 ns simulation, as indicated by metrics such as RMSD, RMSF, Rg, SASA, H-bonds, PCA and FEL analysis. Moreover, PASS analysis and adherence of these natural compounds to drug-likeness rules like Lipinski's further strengthen their candidacy. Considering these calculations and various parameters, these three prominent natural compounds emerge as promising candidates for anti-IL-8 therapy in the management of cancer.

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植物化学物质作为白细胞介素-8 的潜在抑制剂用于抗癌治疗:硅学评估和分子动力学分析。
在已成为潜在治疗干预靶点的可溶性因子领域中,白细胞介素-8(IL-8)这种趋化因子引起了人们的关注,因为它可能对各种癌症类型的治疗反应起到促进作用。利用天然抗癌化合物治疗癌症病人,大大提高了早期和晚期癌症病人的生存率。硅学研究结果为植物化学物质作为 IL-8 潜在抑制剂的应用提供了支持,表现出高结合自由能和关键相互作用的植物化学物质显示出良好的抗癌特性,可作为未来药物开发的候选物质。值得注意的植物化学物质如 IMPHY006634(异海罂粟碱)、IMPHY007957(Chitranone)和 IMPHY013015(1-Hydroxyrutaecarpine)被预测具有抑制 IL-8 的活性,其计算能量分别为 -9.9 至 -9.1 kcal/mol。发现了几个氢键,包括共同的氨基酸残基 Lys9 和 CYS48。通过 RMSD、RMSF、Rg、SASA、H 键、PCA 和 FEL 分析等指标,对这些强效抑制剂进行的分子动力学计算表明,它们在整个 200 ns 模拟过程中具有稳定性。此外,PASS 分析以及这些天然化合物与药物相似性规则(如利平斯基规则)的一致性进一步增强了它们的候选资格。考虑到这些计算和各种参数,这三种突出的天然化合物有望成为抗IL-8治疗癌症的候选化合物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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