FlowerMD: Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics

Marjan Albooyeh, Chris Jones, Rainier Barrett, Eric Jankowski
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Abstract

flowerMD is a package for reproducibly performing multi-stage HOOMD-blue (Anderson et al., 2020) simulation workflows. It enables the programmatic specification of tasks including definition of molecular structures, forcefield definition and application and chaining together simulation stages (e
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FlowerMD:灵活的分子动力学有机工作流程和可扩展配方库
flowerMD 是一个用于可重复执行多阶段 HOOMD-blue(Anderson 等,2020 年)模拟工作流的软件包。它可以对包括分子结构定义、力场定义和应用在内的各项任务进行程序化规范,并将各个模拟阶段串联起来。
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