Marjan Albooyeh, Chris Jones, Rainier Barrett, Eric Jankowski
{"title":"FlowerMD: Flexible Library of Organic Workflows and\nExtensible Recipes for Molecular Dynamics","authors":"Marjan Albooyeh, Chris Jones, Rainier Barrett, Eric Jankowski","doi":"10.21105/joss.05989","DOIUrl":null,"url":null,"abstract":"flowerMD is a package for reproducibly performing multi-stage HOOMD-blue (Anderson et al., 2020) simulation workflows. It enables the programmatic specification of tasks including definition of molecular structures, forcefield definition and application and chaining together simulation stages (e","PeriodicalId":16635,"journal":{"name":"Journal of open source software","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2023-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of open source software","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.21105/joss.05989","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
flowerMD is a package for reproducibly performing multi-stage HOOMD-blue (Anderson et al., 2020) simulation workflows. It enables the programmatic specification of tasks including definition of molecular structures, forcefield definition and application and chaining together simulation stages (e