Use of DeTerm for Automated Drosophila Dendrite Arbor Terminal Counts.

Minami Kimura, Jason Y Tann, Oliver R Wilkes, Fangke Xu, Henrik Skibbe, Adrian W Moore
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Abstract

Neurons have a complex dendritic architecture that governs information flow through a circuit. Manual quantification of dendritic arbor morphometrics is time-consuming and can be inaccurate. Automated quantification systems such as DeTerm help to overcome these limitations. DeTerm is a software tool that automatically recognizes dendrite branch terminals with high precision. It uses an artificial neural network to label the terminals, count them, and provide each terminal's positional data. DeTerm can recognize the dendritic terminals of Drosophila dendritic arborization (da) neurons, and it can also examine other types of neurons, including mouse Purkinje cells. It is freely available and works on Mac, Windows, and Linux. Here, we describe the use of DeTerm.

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使用 DeTerm 自动进行果蝇树突顶端计数。
神经元具有复杂的树突结构,可控制电路中的信息流。树突轴形态计量的人工量化不仅耗时,而且可能不准确。DeTerm 等自动量化系统有助于克服这些局限性。DeTerm 是一种软件工具,能高精度地自动识别树突分支终端。它使用人工神经网络来标记末端、计数末端并提供每个末端的位置数据。DeTerm 能识别果蝇树突分化(da)神经元的树突末端,也能检测其他类型的神经元,包括小鼠浦肯野细胞。它可以在 Mac、Windows 和 Linux 上免费使用。在此,我们将介绍 DeTerm 的使用方法。
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来源期刊
Cold Spring Harbor protocols
Cold Spring Harbor protocols Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
CiteScore
3.00
自引率
0.00%
发文量
163
期刊介绍: Cold Spring Harbor Laboratory is renowned for its teaching of biomedical research techniques. For decades, participants in its celebrated, hands-on courses and users of its laboratory manuals have gained access to the most authoritative and reliable methods in molecular and cellular biology. Now that access has moved online. Cold Spring Harbor Protocols is an interdisciplinary journal providing a definitive source of research methods in cell, developmental and molecular biology, genetics, bioinformatics, protein science, computational biology, immunology, neuroscience and imaging. Each monthly issue details multiple essential methods—a mix of cutting-edge and well-established techniques.
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