Identification and validation of genes associated with aging-related cardiovascular disease

IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY The FASEB Journal Pub Date : 2024-01-03 DOI:10.1096/fj.202301270RR
Jing Li, Shengping Jiang, Chengyun Huang, Baihui Lu, Xiaolong Yang
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Abstract

Aging is acknowledged as the most significant risk factor for cardiovascular disease (CVD). This study sought to identify and validate potential aging-related genes associated with CVD by using bioinformatics. The confluence of the limma test, weighted correlation network analysis (WGCNA), and 2129 aging and senescence-associated genes led to the identification of aging-related differential expression genes (ARDEGs). By using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG), potential biological roles and pathways of ARDEGs were identified. To find the significantly different functions between CVD and non-cardiovascular disease (nCVD) and to reckon the processes score, enrichment analysis of all genes was carried out using gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA). By using GO and KEGG, potential biological roles and pathways of ARDEGs were identified. To evaluate the immune cell composition of the immune microenvironment, we performed an immune infiltration analysis on the dataset from the training group. We were able to acquire four ARDEGs (PTGS2, MMP9, HBEGF, and FN1). Aging, cellular senescence, and nitric oxide signal transduction were selected for biological function analysis. The diagnostic value of the four ARDEGs in distinguishing CVD from nCVD samples was deemed to be favorable. This research identified four ARDEGs that are associated with CVD. This study provides insight into prospective novel biomarkers for aging-related CVD diagnosis and progression monitoring.

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鉴定和验证与衰老相关的心血管疾病的相关基因。
衰老被认为是心血管疾病(CVD)最重要的风险因素。本研究试图利用生物信息学方法来识别和验证与心血管疾病相关的潜在衰老相关基因。通过limma测试、加权相关网络分析(WGCNA)和2129个衰老和衰老相关基因的综合分析,确定了衰老相关差异表达基因(ARDEGs)。通过使用基因本体(GO)和京都基因和基因组百科全书(KEGG),确定了 ARDEGs 的潜在生物学作用和通路。为了发现心血管疾病和非心血管疾病(nCVD)之间的明显不同功能并计算过程得分,使用基因组富集分析(GSEA)和基因组变异分析(GSVA)对所有基因进行了富集分析。通过使用 GO 和 KEGG,确定了 ARDEGs 的潜在生物学作用和通路。为了评估免疫微环境的免疫细胞组成,我们对训练组的数据集进行了免疫浸润分析。我们获得了四个 ARDEGs(PTGS2、MMP9、HBEGF 和 FN1)。我们选择了衰老、细胞衰老和一氧化氮信号转导进行生物功能分析。四种 ARDEGs 在区分心血管疾病和非心血管疾病样本方面的诊断价值被认为是有利的。这项研究发现了四种与心血管疾病相关的 ARDEGs。这项研究为与衰老相关的心血管疾病诊断和进展监测提供了前瞻性的新型生物标志物。
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来源期刊
The FASEB Journal
The FASEB Journal 生物-生化与分子生物学
CiteScore
9.20
自引率
2.10%
发文量
6243
审稿时长
3 months
期刊介绍: The FASEB Journal publishes international, transdisciplinary research covering all fields of biology at every level of organization: atomic, molecular, cell, tissue, organ, organismic and population. While the journal strives to include research that cuts across the biological sciences, it also considers submissions that lie within one field, but may have implications for other fields as well. The journal seeks to publish basic and translational research, but also welcomes reports of pre-clinical and early clinical research. In addition to research, review, and hypothesis submissions, The FASEB Journal also seeks perspectives, commentaries, book reviews, and similar content related to the life sciences in its Up Front section.
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