The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2023-10-31 DOI:10.3389/fninf.2023.1276407
Maryann E. Martone
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Abstract

Neuroscience has made significant strides over the past decade in moving from a largely closed science characterized by anemic data sharing, to a largely open science where the amount of publicly available neuroscience data has increased dramatically. While this increase is driven in significant part by large prospective data sharing studies, we are starting to see increased sharing in the long tail of neuroscience data, driven no doubt by journal requirements and funder mandates. Concomitant with this shift to open is the increasing support of the FAIR data principles by neuroscience practices and infrastructure. FAIR is particularly critical for neuroscience with its multiplicity of data types, scales and model systems and the infrastructure that serves them. As envisioned from the early days of neuroinformatics, neuroscience is currently served by a globally distributed ecosystem of neuroscience-centric data repositories, largely specialized around data types. To make neuroscience data findable, accessible, interoperable, and reusable requires the coordination across different stakeholders, including the researchers who produce the data, data repositories who make it available, the aggregators and indexers who field search engines across the data, and community organizations who help to coordinate efforts and develop the community standards critical to FAIR. The International Neuroinformatics Coordinating Facility has led efforts to move neuroscience toward FAIR, fielding several resources to help researchers and repositories achieve FAIR. In this perspective, I provide an overview of the components and practices required to achieve FAIR in neuroscience and provide thoughts on the past, present and future of FAIR infrastructure for neuroscience, from the laboratory to the search engine.

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神经科学数据共享的过去、现在和未来:FAIR 实践和基础设施现状透视
在过去的十年中,神经科学取得了长足的进步,从一门以数据共享不充分为特点的封闭科学,转变为一门公开神经科学数据量大幅增加的开放科学。虽然这种增长在很大程度上是由大型前瞻性数据共享研究推动的,但我们也开始看到神经科学长尾数据共享的增加,这无疑是由期刊要求和资助者授权推动的。在转向开放的同时,神经科学的实践和基础设施也越来越支持 FAIR 数据原则。FAIR 对神经科学尤为重要,因为神经科学的数据类型、规模和模型系统以及为其服务的基础设施多种多样。正如神经信息学早期所设想的那样,神经科学目前由分布在全球的以神经科学为中心的数据存储库生态系统提供服务,这些存储库主要围绕数据类型进行专门化。要实现神经科学数据的可查找、可访问、可互操作和可重复使用,需要不同利益相关者之间的协调,包括生产数据的研究人员、提供数据的数据存储库、在数据中使用搜索引擎的聚合器和索引器,以及帮助协调工作和制定对 FAIR 至关重要的社区标准的社区组织。国际神经信息学协调机构(International Neuroinformatics Coordinating Facility)领导了神经科学迈向 FAIR 的努力,提供了多种资源帮助研究人员和数据存储库实现 FAIR。在本文中,我将概述在神经科学领域实现 FAIR 所需的要素和实践,并对神经科学 FAIR 基础设施的过去、现在和未来(从实验室到搜索引擎)进行思考。
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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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