Molecular Characterization, Phylogeny, and Expression Profiles of SoxE Subfamily in Scophthalmus maximus

IF 0.7 4区 农林科学 Q4 FISHERIES Journal of Applied Ichthyology Pub Date : 2024-01-02 DOI:10.1155/2024/7014567
Qing Ji, Honglu Guo, Anxin Shi, Xingqiang Wang, Jiachen Yu, Ziyi Zhang, Jiayang Chen, Xiaowei Shi
{"title":"Molecular Characterization, Phylogeny, and Expression Profiles of SoxE Subfamily in Scophthalmus maximus","authors":"Qing Ji,&nbsp;Honglu Guo,&nbsp;Anxin Shi,&nbsp;Xingqiang Wang,&nbsp;Jiachen Yu,&nbsp;Ziyi Zhang,&nbsp;Jiayang Chen,&nbsp;Xiaowei Shi","doi":"10.1155/2024/7014567","DOIUrl":null,"url":null,"abstract":"<p>SOXE transcription factors, including SOX8, SOX9, and SOX10, regulate several developmental events, such as sex determination, chondrogenesis, and neurogenesis. This study systematically identified six <i>SoxE</i> subfamily genes from the turbot (<i>Scophthalmus maximus</i>) genome and transcriptome, including <i>SmSox8a</i>, <i>SmSox8b</i>, <i>SmSox9a</i>, <i>SmSox9b</i>, <i>SmSox10a</i>, and <i>SmSox10b</i>. The duplicates of three SOXE members revealed that <i>SoxE</i> subfamily genes in the turbot underwent significant expansion. Relatively conserved exon-intron structures and intron insertions were detected using genomic structural analysis. Besides, phylogenetic analysis supported the previous classification of the <i>SoxE</i> subfamily. Results of the expression profile revealed that turbot <i>SoxE</i> subfamily genes may be involved in different activities, such as neurogenesis and gonad development. These findings would assist in the understanding of fish <i>SoxE</i> gene subfamily activities and evolution.</p>","PeriodicalId":14894,"journal":{"name":"Journal of Applied Ichthyology","volume":null,"pages":null},"PeriodicalIF":0.7000,"publicationDate":"2024-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Applied Ichthyology","FirstCategoryId":"97","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1155/2024/7014567","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"FISHERIES","Score":null,"Total":0}
引用次数: 0

Abstract

SOXE transcription factors, including SOX8, SOX9, and SOX10, regulate several developmental events, such as sex determination, chondrogenesis, and neurogenesis. This study systematically identified six SoxE subfamily genes from the turbot (Scophthalmus maximus) genome and transcriptome, including SmSox8a, SmSox8b, SmSox9a, SmSox9b, SmSox10a, and SmSox10b. The duplicates of three SOXE members revealed that SoxE subfamily genes in the turbot underwent significant expansion. Relatively conserved exon-intron structures and intron insertions were detected using genomic structural analysis. Besides, phylogenetic analysis supported the previous classification of the SoxE subfamily. Results of the expression profile revealed that turbot SoxE subfamily genes may be involved in different activities, such as neurogenesis and gonad development. These findings would assist in the understanding of fish SoxE gene subfamily activities and evolution.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
鲆鲽类 SoxE 亚家族的分子特征、系统发育和表达谱系
SOXE转录因子,包括SOX8、SOX9和SOX10,调控多种发育事件,如性别决定、软骨形成和神经发生。这项研究从大菱鲆(Scophthalmus maximus)基因组和转录组中系统鉴定了六个SoxE亚家族基因,包括SmSox8a、SmSox8b、SmSox9a、SmSox9b、SmSox10a和SmSox10b。3个SOXE成员的重复序列显示,大菱鲆中的SoxE亚家族基因发生了显著的扩增。通过基因组结构分析,发现了相对保守的外显子-内含子结构和内含子插入。此外,系统发育分析支持了之前对 SoxE 亚家族的分类。表达谱分析结果显示,大菱鲆 SoxE 亚家族基因可能参与不同的活动,如神经发生和性腺发育。这些发现有助于了解鱼类 SoxE 基因亚家族的活动和进化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Applied Ichthyology
Journal of Applied Ichthyology 生物-海洋与淡水生物学
CiteScore
2.30
自引率
11.10%
发文量
73
审稿时长
3-8 weeks
期刊介绍: The Journal of Applied Ichthyology publishes articles of international repute on ichthyology, aquaculture, and marine fisheries; ichthyopathology and ichthyoimmunology; environmental toxicology using fishes as test organisms; basic research on fishery management; and aspects of integrated coastal zone management in relation to fisheries and aquaculture. Emphasis is placed on the application of scientific research findings, while special consideration is given to ichthyological problems occurring in developing countries. Article formats include original articles, review articles, short communications and technical reports.
期刊最新文献
DNA Barcoding of Nematode Parasites Infecting Ompok bimaculatus and Nemacheilus anguilla From Barvi Reservoir, Maharashtra Unraveling the Impact of Climate Change on Fish Physiology: A Focus on Temperature and Salinity Dynamics Length-Weight Relationships of Native and Non-Native Fishes in the Lower Red River Catchment, USA Assessing Invasive Carp in the Neosho River-Grand Lake System of Kansas and Oklahoma Effects of Temperature on the Gastric Evacuation Rate and Maintenance Ration of Adult Pointhead Flounder Cleisthenes pinetorum
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1