Zehr, J. P., and Capone, D. G. 2021. Marine Nitrogen Fixation. Springer Nature Switzerland: Cham, ISBN 978-3-030-67745-9. 10.1007/978-3-030-67746-6. Suggested retail price $119.99 hardcover, $89.00 ebook
{"title":"Zehr, J. P., and Capone, D. G. 2021. Marine Nitrogen Fixation. Springer Nature Switzerland: Cham, ISBN 978-3-030-67745-9. 10.1007/978-3-030-67746-6. Suggested retail price $119.99 hardcover, $89.00 ebook","authors":"Patrick L. Brezonik","doi":"10.1002/lob.10618","DOIUrl":null,"url":null,"abstract":"<p>Biological nitrogen (N<sub>2</sub>) fixation is critically important in the global nitrogen cycle because it is largely responsible for balancing the losses of fixed (bio-available) N by such processes as microbial denitrification. Although atmospheric lightning is a well-known natural mechanism for converting N<sub>2</sub> to N oxides that eventually become nitrate ions, this is a small global source (~ 5 Tg yr<sup>−1</sup>) compared to other sources of fixation. For example, anthropogenic combustion of fossil fuels produces roughly six times as much fixed N as lightning (~ 30 Tg yr<sup>−1</sup>). In contrast, biological fixation from all sources, including natural terrestrial and aquatic systems and legumes used in agriculture, amounts to about 260 Tg yr<sup>−1</sup> globally (Fowler et al. <span>2013</span>). Appreciation for the general role of legumes in fertilizing soil has been understood at least since Roman times, and the mechanism for this, N<sub>2</sub> fixation, has been recognized since the mid-1800s.</p><p>Given that the oceans cover 70% of the Earth's surface, their role in fixing N<sub>2</sub> has interested marine scientists and biogeochemists for many decades. Although microbiologists documented the presence of N<sub>2</sub>-fixing microbes in the oceans in the early 1900s, actual measurement of marine N<sub>2</sub> fixation using <sup>15</sup>N tracer technology was not achieved until the early 1960s. Since then, a substantial quantity of research on marine N<sub>2</sub> fixation has occurred. The book that is the subject of this review provides a thorough and first-rate review of our state of knowledge on this topic.</p><p>The book's eight main chapters cover much more than marine N<sub>2</sub> fixation, including much on its biochemistry and on methods to study it in various environments. Chapter 1 is a nicely written general introduction to the nitrogen cycle, and Chapter 10 is a summary of the main points made in preceding chapters. The book concludes with 17 still-unanswered questions that the authors provide as a guide for continuing research on this topic.</p><p>The real heart of the book begins in Chapter 2, which is an extensive treatment of the fundamentals of N<sub>2</sub> fixation. Topics include: its microbiology—who does it, which is shown to be an eclectic range of prokaryotic organisms known as diazotrophs; the complicated nature of nitrogenase enzymes and nonstructural genes required to make the process work; the actual reduction reaction of N<sub>2</sub> to 2NH<sub>3</sub>; and cellular mechanisms used to regulate formation of nitrogenase and related proteins. The majority of the 84 references in this well-documented chapter are recent (past 20 years), and the treatment is up-to-date. I found the section on regulation of nitrogenase formation revelatory and particularly interesting. A topic not covered in detail, however, is the actual structure of the active site for N<sub>2</sub> reduction, which is now understood at the atomic structure level. Because the nature of the intermediates between N<sub>2</sub> and NH<sub>3</sub> remains controversial, however, ab initio molecular dynamics modeling of transition state conditions is still only a future prospect (Einsle and Rees <span>2020</span>).</p><p>Experimentalists will find Chapter 5, which describes methods used to study marine N<sub>2</sub> fixation, particularly useful. Topics range from laboratory techniques, such as gene analysis and ways to cultivate diazotrophs, to environmental observations, such as remote sensing, use of biogeochemical proxies, and mathematical modeling. Useful practical information is included on methods to measure rates of fixation, including <sup>15</sup>N tracers, acetylene reduction, and the more recent technique of measuring H<sub>2</sub> production (H<sub>2</sub> is also a product of N<sub>2</sub> reduction by nitrogenase). Although I was familiar with the <sup>15</sup>N and acetylene reduction methods, most of the content of this chapter was eye-opening to me, as I think it will be to readers who are not already experts on N<sub>2</sub> fixation.</p><p>As a process-oriented biogeochemist, I was especially interested in learning more about the rates of N<sub>2</sub> fixation in the oceans. Chapters 3, 4, and 6–8 cover various aspects on the occurrence of N<sub>2</sub> fixers and their activity in marine environments, including estuaries, open ocean surface waters, deep hypoxic zones, sediments, and coral reefs. Although there is much qualitative information on factors that affect N<sub>2</sub>-fixing activity (Chapter 6), I was not able to find information expressed in conventional rate units (e.g., mass fixed per volume or per biomass per unit time). Such information would be useful in understanding how significant fixation is in supplying the nitrogen needs for primary production.</p><p>Instead, Chapter 8 focuses on global contributions of marine N<sub>2</sub> fixation (in Tg yr<sup>−1</sup>), as synthesized from measured data. Of course, that is useful for global budgeting purposes, but it is not directly helpful in answering shorter-term ecological questions. As the authors rightly observe, scaling up individual measurements to global oceanic contributions of N<sub>2</sub> fixation is exceedingly difficult because of the huge temporal and spatial variability of fixation in the oceans relative to the availability of measured rates. Early estimates of global contributions, based on observed fixation rates by <i>Trichodesmium</i> and estimates of their mass abundance across the oceans, were far smaller than estimates of oceanic N losses by denitrification and ammonium oxidation (annamox), leading to an apparently imbalanced budget. According to the authors, such an imbalance is improbable over long time-scales. More recent estimates of oceanic N<sub>2</sub> fixation described in Chapter 8 rely on indirect basin-scale biogeochemical and modeling approaches. One approach is based on variations in <sup>15</sup>N isotope natural abundance caused by the slight discrimination against using the heavier isotope (<sup>15</sup>N) that occurs in most N-cycle processes except for N<sub>2</sub> fixation. Another approach analyzes basin-scale deviations from the Redfield N : P ratio; net denitrification leads to lower N : P ratios, and net fixation does the opposite. Such indirect estimates yield much larger contributions (~ 200 Tg yr<sup>−1</sup>, according to the authors) than upscaling measured rates, apparently balancing the budget. As the authors point out, however, such estimates are based on numerous assumptions. Consequently, much uncertainty remains in the contributions of marine N<sub>2</sub> fixation to the global N budget.</p><p>Given that all chapters dealing with environmental aspects of N<sub>2</sub> fixation focus on marine systems (open oceans, coastal regions, and sediments), the book is aptly named. As one who spent some efforts early in my career measuring N<sub>2</sub> fixation rates in lakes and wetlands (e.g., Brezonik and Harper <span>1969</span>), however, I wish the authors had included a chapter on freshwaters. Although that literature is not as abundant as that for marine environments, substantial research on N<sub>2</sub> fixation in lakes, rivers, and wetlands has been accomplished and apparently has not been the topic of a general review. Out of curiosity, I did a Web of Science search and found 2577 articles associated with the term “marine nitrogen fixation,” and 1251 articles associated with N<sub>2</sub> fixation in lakes, wetlands, or freshwaters; a search that included the word “review” yielded no general reviews on N<sub>2</sub> fixation in freshwaters. Of course, not all articles that mention these search terms actually report results related to the terms; nonetheless, the above figures suggest that a review of N<sub>2</sub> fixation in freshwaters would be useful. Meanwhile, aquatic ecologists will find <i>Marine Nitrogen Fixation</i> worth reading and a useful addition to their libraries.</p>","PeriodicalId":40008,"journal":{"name":"Limnology and Oceanography Bulletin","volume":"33 1","pages":"42-43"},"PeriodicalIF":0.0000,"publicationDate":"2024-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/lob.10618","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Limnology and Oceanography Bulletin","FirstCategoryId":"1085","ListUrlMain":"https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lob.10618","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Biological nitrogen (N2) fixation is critically important in the global nitrogen cycle because it is largely responsible for balancing the losses of fixed (bio-available) N by such processes as microbial denitrification. Although atmospheric lightning is a well-known natural mechanism for converting N2 to N oxides that eventually become nitrate ions, this is a small global source (~ 5 Tg yr−1) compared to other sources of fixation. For example, anthropogenic combustion of fossil fuels produces roughly six times as much fixed N as lightning (~ 30 Tg yr−1). In contrast, biological fixation from all sources, including natural terrestrial and aquatic systems and legumes used in agriculture, amounts to about 260 Tg yr−1 globally (Fowler et al. 2013). Appreciation for the general role of legumes in fertilizing soil has been understood at least since Roman times, and the mechanism for this, N2 fixation, has been recognized since the mid-1800s.
Given that the oceans cover 70% of the Earth's surface, their role in fixing N2 has interested marine scientists and biogeochemists for many decades. Although microbiologists documented the presence of N2-fixing microbes in the oceans in the early 1900s, actual measurement of marine N2 fixation using 15N tracer technology was not achieved until the early 1960s. Since then, a substantial quantity of research on marine N2 fixation has occurred. The book that is the subject of this review provides a thorough and first-rate review of our state of knowledge on this topic.
The book's eight main chapters cover much more than marine N2 fixation, including much on its biochemistry and on methods to study it in various environments. Chapter 1 is a nicely written general introduction to the nitrogen cycle, and Chapter 10 is a summary of the main points made in preceding chapters. The book concludes with 17 still-unanswered questions that the authors provide as a guide for continuing research on this topic.
The real heart of the book begins in Chapter 2, which is an extensive treatment of the fundamentals of N2 fixation. Topics include: its microbiology—who does it, which is shown to be an eclectic range of prokaryotic organisms known as diazotrophs; the complicated nature of nitrogenase enzymes and nonstructural genes required to make the process work; the actual reduction reaction of N2 to 2NH3; and cellular mechanisms used to regulate formation of nitrogenase and related proteins. The majority of the 84 references in this well-documented chapter are recent (past 20 years), and the treatment is up-to-date. I found the section on regulation of nitrogenase formation revelatory and particularly interesting. A topic not covered in detail, however, is the actual structure of the active site for N2 reduction, which is now understood at the atomic structure level. Because the nature of the intermediates between N2 and NH3 remains controversial, however, ab initio molecular dynamics modeling of transition state conditions is still only a future prospect (Einsle and Rees 2020).
Experimentalists will find Chapter 5, which describes methods used to study marine N2 fixation, particularly useful. Topics range from laboratory techniques, such as gene analysis and ways to cultivate diazotrophs, to environmental observations, such as remote sensing, use of biogeochemical proxies, and mathematical modeling. Useful practical information is included on methods to measure rates of fixation, including 15N tracers, acetylene reduction, and the more recent technique of measuring H2 production (H2 is also a product of N2 reduction by nitrogenase). Although I was familiar with the 15N and acetylene reduction methods, most of the content of this chapter was eye-opening to me, as I think it will be to readers who are not already experts on N2 fixation.
As a process-oriented biogeochemist, I was especially interested in learning more about the rates of N2 fixation in the oceans. Chapters 3, 4, and 6–8 cover various aspects on the occurrence of N2 fixers and their activity in marine environments, including estuaries, open ocean surface waters, deep hypoxic zones, sediments, and coral reefs. Although there is much qualitative information on factors that affect N2-fixing activity (Chapter 6), I was not able to find information expressed in conventional rate units (e.g., mass fixed per volume or per biomass per unit time). Such information would be useful in understanding how significant fixation is in supplying the nitrogen needs for primary production.
Instead, Chapter 8 focuses on global contributions of marine N2 fixation (in Tg yr−1), as synthesized from measured data. Of course, that is useful for global budgeting purposes, but it is not directly helpful in answering shorter-term ecological questions. As the authors rightly observe, scaling up individual measurements to global oceanic contributions of N2 fixation is exceedingly difficult because of the huge temporal and spatial variability of fixation in the oceans relative to the availability of measured rates. Early estimates of global contributions, based on observed fixation rates by Trichodesmium and estimates of their mass abundance across the oceans, were far smaller than estimates of oceanic N losses by denitrification and ammonium oxidation (annamox), leading to an apparently imbalanced budget. According to the authors, such an imbalance is improbable over long time-scales. More recent estimates of oceanic N2 fixation described in Chapter 8 rely on indirect basin-scale biogeochemical and modeling approaches. One approach is based on variations in 15N isotope natural abundance caused by the slight discrimination against using the heavier isotope (15N) that occurs in most N-cycle processes except for N2 fixation. Another approach analyzes basin-scale deviations from the Redfield N : P ratio; net denitrification leads to lower N : P ratios, and net fixation does the opposite. Such indirect estimates yield much larger contributions (~ 200 Tg yr−1, according to the authors) than upscaling measured rates, apparently balancing the budget. As the authors point out, however, such estimates are based on numerous assumptions. Consequently, much uncertainty remains in the contributions of marine N2 fixation to the global N budget.
Given that all chapters dealing with environmental aspects of N2 fixation focus on marine systems (open oceans, coastal regions, and sediments), the book is aptly named. As one who spent some efforts early in my career measuring N2 fixation rates in lakes and wetlands (e.g., Brezonik and Harper 1969), however, I wish the authors had included a chapter on freshwaters. Although that literature is not as abundant as that for marine environments, substantial research on N2 fixation in lakes, rivers, and wetlands has been accomplished and apparently has not been the topic of a general review. Out of curiosity, I did a Web of Science search and found 2577 articles associated with the term “marine nitrogen fixation,” and 1251 articles associated with N2 fixation in lakes, wetlands, or freshwaters; a search that included the word “review” yielded no general reviews on N2 fixation in freshwaters. Of course, not all articles that mention these search terms actually report results related to the terms; nonetheless, the above figures suggest that a review of N2 fixation in freshwaters would be useful. Meanwhile, aquatic ecologists will find Marine Nitrogen Fixation worth reading and a useful addition to their libraries.
Zehr, J. P., and Capone, D. G.2021.海洋固氮。Springer Nature Switzerland:Cham, ISBN 978-3-030-67745-9.10.1007/978‐3‐030‐67746‐6.建议零售价:精装本 119.99 美元,电子书 89.00 美元
正如作者正确地观察到的那样,将单个测量扩大到全球海洋对氮固定的贡献是极其困难的,因为相对于测量速率的可用性,海洋中固定的时间和空间变化很大。对全球贡献的早期估计是基于观测到的菌毛菌固定率和对其在海洋中的质量丰度的估计,远远小于对反硝化和氨氧化(氨氧化)造成的海洋氮损失的估计,导致预算显然不平衡。根据作者的说法,这种不平衡在长时间尺度上是不可能的。第8章中描述的对海洋氮固定作用的最新估计依赖于间接的盆地尺度生物地球化学和模拟方法。一种方法是基于15N同位素自然丰度的变化,这种变化是由于对使用较重同位素(15N)的轻微歧视造成的,这种歧视发生在除N2固定外的大多数n循环过程中。另一种方法是分析盆地尺度上与Redfield N: P比值的偏差;净反硝化作用导致氮磷比降低,而净固定作用则相反。这种间接估算产生的贡献(据作者称,约为200 Tg / yr - 1)比提高测量率要大得多,显然可以平衡预算。然而,正如作者指出的那样,这样的估计是基于许多假设。因此,海洋氮固定对全球氮收支的贡献仍然存在很大的不确定性。鉴于所有章节处理的N2固定的环境方面侧重于海洋系统(开放的海洋,沿海地区和沉积物),这本书是恰当的命名。然而,作为一个在我职业生涯早期花了一些时间测量湖泊和湿地中N2固定率的人(例如,Brezonik和Harper 1969),我希望作者们能在淡水中加入一个章节。虽然这方面的文献不像海洋环境那样丰富,但对湖泊、河流和湿地中N2固定的大量研究已经完成,显然还没有成为一般性综述的主题。出于好奇,我在科学网上搜索了一下,发现了2577篇与“海洋固氮”相关的文章,1251篇与湖泊、湿地或淡水中的氮气固定相关的文章;包含“review”一词的搜索没有得到关于淡水中N2固定的一般评论。当然,并不是所有提到这些搜索词的文章都会报告与这些词相关的结果;尽管如此,上述数据表明,对淡水中氮固定的回顾是有用的。与此同时,水生生态学家会发现海洋固氮物值得一读,是他们图书馆的有用补充。
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