In silico prediction of preventive activities of bioactive hazelnut peptides against COVID‐19 and Monkeypox 2022

IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Peptide Science Pub Date : 2024-01-10 DOI:10.1002/pep2.24341
Zeynep Saliha Güneş, B. Cakir, İbrahim Gülseren
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Abstract

The coronavirus 2 (SARS‐CoV‐2), a positive‐sense RNA virus that causes severe acute respiratory illness, is the cause of Coronavirus Disease 2019 (COVID‐19) and Monkeypox is a zoonotic viral disease caused by a double‐strand enveloped DNA virus, a member of the Poxviridae family under the umbrella of the Orthopoxvirus genus. These viruses have harmed global health, societal stability, and global economy prompting the development of new therapeutic options. The purpose of this study was to analyze the potency of hazelnut‐derived bioactive peptides for usage in preventive measures against SARS‐CoV‐2 and Monkeypox infections. Since SARS‐CoV‐2 entry into the host cell takes place through angiotensin‐converting enzyme (ACE) receptors, an in silico attempt was made here to analyze the previously characterized ACE‐inhibitory hazelnut peptides for their anti‐COVID potential. First of all, peptide sequences with PeptideRanker values >0.5 were determined, where 43 of 256 hazelnut peptides met this condition. BIOPEP tools were used to calculate their ACE‐inhibitory characteristics. VPHW and DENPRHF demonstrated the strongest ACE‐inhibitory activity based on BIOPEP analysis. The binding potentials of VPHW (p < 0.001) and DENPRHF (p < 0.001) peptides to ACE were statistically significant based on PepSite2 analysis. The hazelnut‐derived peptides were docked with ACE, spike proteins, SARS‐CoV‐2 proteases, host cell receptors, and Monkeypox 2022 membrane proteins using HPEPDOCK and CABS‐dock. The in silico findings pointed out potential inhibition of SARS‐CoV‐2 main protease in the host cell and Monkeypox 2022 membrane protein and demonstration of multiple bioactivities.

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2022 年生物活性榛子肽对 COVID-19 和猴痘预防活性的硅学预测
冠状病毒 2(SARS-CoV-2)是一种引起严重急性呼吸道疾病的正感 RNA 病毒,是 2019 年冠状病毒病(COVID-19)的病原体,而猴痘是一种由双链包膜 DNA 病毒引起的人畜共患病毒性疾病,属于痘病毒科,属于正痘病毒属。这些病毒危害全球健康、社会稳定和全球经济,促使人们开发新的治疗方案。本研究的目的是分析榛子提取的生物活性肽在预防 SARS-CoV-2 和猴痘感染中的有效性。由于 SARS-CoV-2 是通过血管紧张素转换酶(ACE)受体进入宿主细胞的,因此本研究尝试对之前表征过的抑制 ACE 的榛子肽的抗 COVID 潜力进行分析。首先,确定了 PeptideRanker 值大于 0.5 的肽序列,256 种榛子肽中有 43 种符合这一条件。BIOPEP 工具用于计算它们的 ACE 抑制特性。根据BIOPEP分析,VPHW和DENPRHF表现出最强的ACE抑制活性。根据 PepSite2 分析,VPHW(p < 0.001)和 DENPRHF(p < 0.001)肽与 ACE 的结合潜力具有统计学意义。利用 HPEPDOCK 和 CABS-dock,榛子多肽与 ACE、尖峰蛋白、SARS-CoV-2 蛋白酶、宿主细胞受体和猴痘 2022 膜蛋白进行了对接。硅学研究结果表明,这些肽对宿主细胞中的 SARS-CoV-2 主要蛋白酶和猴痘 2022 膜蛋白具有潜在的抑制作用,并展示了多种生物活性。
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来源期刊
Peptide Science
Peptide Science Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
5.20
自引率
4.20%
发文量
36
期刊介绍: The aim of Peptide Science is to publish significant original research papers and up-to-date reviews covering the entire field of peptide research. Peptide Science provides a forum for papers exploring all aspects of peptide synthesis, materials, structure and bioactivity, including the use of peptides in exploring protein functions and protein-protein interactions. By incorporating both experimental and theoretical studies across the whole spectrum of peptide science, the journal serves the interdisciplinary biochemical, biomaterials, biophysical and biomedical research communities. Peptide Science is the official journal of the American Peptide Society.
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