PHGD: An integrative and user-friendly database for plant hormone-related genes

IF 23.7 Q1 MICROBIOLOGY iMeta Pub Date : 2024-01-08 DOI:10.1002/imt2.164
Shuyan Feng, Zhuo Liu, Huilong Chen, Nan Li, Tong Yu, Rong Zhou, Fulei Nie, Di Guo, Xiao Ma, Xiaoming Song
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Abstract

Plant Hormone Gene Database (PHGD) database platform construction pipeline. First, we collected all reported hormone-related genes in the model plant Arabidopsis thaliana, and combined with the existing experimental background, mapped the hormone–gene interaction network to provide a blueprint. Next, we collected 469 high-quality plant genomes. Then, bioinformatics was used to identify hormone-related genes in these plants. Finally, these genetic data were programmed to be stored in a database and a platform website PHGD was built. PHGD was divided into eight modules, namely Home, Browse, Search, Resources, Download, Tools, Help, and Contact. We provided data resources and platform services to facilitate the study of plant hormones.

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PHGD:植物激素相关基因的综合性、用户友好型数据库
植物激素基因数据库(PHGD)数据库平台构建流水线。首先,我们收集了模式植物拟南芥中所有已报道的激素相关基因,并结合已有的实验背景,绘制了激素-基因相互作用网络蓝图。接下来,我们收集了 469 个高质量的植物基因组。然后,我们利用生物信息学来识别这些植物中与激素相关的基因。最后,这些基因数据被编程存储在数据库中,并建立了 PHGD 平台网站。PHGD 分为八个模块,即主页、浏览、搜索、资源、下载、工具、帮助和联系。我们提供了数据资源和平台服务,为植物激素研究提供了便利。
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