Are we still chasing molecules that were never there? The role of quantum chemical simulations of NMR parameters in structural reassignment of natural products

Ana C. F. de Albuquerque, Lucas Martorano, Fernando M. dos Santos
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Abstract

Covering: 2019 to 2023. Even with the advent of modern and complementary spectroscopy techniques, comprehensive characterization of natural product continues to represent an onerous and time-consuming task, being far away to become rather “routine”. Mainly due to their highly complex structures and small amount of isolated sample, in milligram or sub-milligram quantities, structural misassignment of natural products are still a recurrence theme in the modern literature. Since the seminal paper from Nicolau and Snider, in 2005, evaluating the various cases of reassignment of natural products, from the present era, in which NMR parameters calculations play such an important role in the structural elucidation of natural products, helping to uncover and ultimately revise the structure of previously reported compounds, a pertinent question arises: are we still chasing molecules that were never there? In this minireview, we intent to discuss the current state of computational NMR parameter calculations, with a particular focus on their application in the structural determination of natural products. Additionally, we have conducted a comprehensive survey of the literature spanning the years 2019–2023, in order to select and discuss recent noteworthy cases of incorrectly assigned structures that were revised through NMR calculations. Therefore, our main goal is to show what can be done through computational simulations of NMR parameters, currently user-friendly and easily implemented by non-expert users with basic skills in computational chemistry, before venturing into complex and time-consuming total synthesis projects. In conclusion, we anticipate a promising future for NMR parameter calculations, fueled by the ongoing development of user-friendly tools and the integration of artificial intelligence. The emergence of these advancements is poised to broaden the applications of NMR simulations, offering a more accessible and reliable means to address the persistent challenge of structural misassignments in natural product chemistry.
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我们是否仍在追逐从未存在过的分子?核磁共振参数的量子化学模拟在天然产物结构重配中的作用
时间跨度:2019 年至 2023 年。即使出现了现代互补光谱技术,天然产物的综合表征仍然是一项繁重而耗时的任务,距离成为 "常规 "还很遥远。主要由于天然产物的结构非常复杂,而且分离样品的数量很少,只有毫克或亚毫克级的数量,因此天然产物的结构错误鉴定仍然是现代文献中经常出现的主题。2005 年,Nicolau 和 Snider 发表了一篇开创性的论文,对天然产物的各种重新赋值案例进行了评估。在当今时代,核磁共振参数计算在天然产物的结构阐释中发挥了重要作用,帮助发现并最终修正了先前报告的化合物的结构,自此,一个相关的问题出现了:我们是否仍在追逐从未存在过的分子?在本小视图中,我们将讨论计算 NMR 参数计算的现状,尤其关注其在天然产物结构确定中的应用。此外,我们还对 2019-2023 年间的文献进行了全面调查,以选择和讨论近期通过核磁共振计算修正了错误分配结构的值得注意的案例。因此,我们的主要目标是展示通过核磁共振参数计算模拟可以完成哪些工作,这些工作目前对用户友好,具有计算化学基本技能的非专业用户可以轻松实现,然后再涉足复杂耗时的全合成项目。总之,随着用户友好型工具的不断开发和人工智能的不断融入,我们预计 NMR 参数计算的未来将大有可为。这些进步的出现有望拓宽核磁共振模拟的应用领域,为解决天然产物化学中长期存在的结构误判难题提供更便捷、更可靠的方法。
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