Unsupervised SoftOtsuNet Augmentation for Clinical Dermatology Image Classifiers.

AMIA ... Annual Symposium proceedings. AMIA Symposium Pub Date : 2024-01-11 eCollection Date: 2023-01-01
Miguel Dominguez, John T Finnell
{"title":"Unsupervised SoftOtsuNet Augmentation for Clinical Dermatology Image Classifiers.","authors":"Miguel Dominguez, John T Finnell","doi":"","DOIUrl":null,"url":null,"abstract":"<p><p>Data Augmentation is a crucial tool in the Machine Learning (ML) toolbox because it can extract novel, useful training images from an existing dataset, thereby improving accuracy and reducing overfitting in a Deep Neural Network (DNNs). However, clinical dermatology images often contain irrelevant background information,such as furniture and objects in the frame. DNNs make use of that information when optimizing the loss function. Data augmentation methods that preserve this information risk creating biases in the DNN's understanding (for example, that objects in a particular doctor's office are a clue that the patient has cutaneous T-cell lymphoma). Creating a supervised foreground/background segmentation algorithm for clinical dermatology images that removes this irrelevant information would be prohibitively expensive due to labeling costs. To that end, we propose a novel unsupervised DNN that dynamically masks out image information based on a combination of a differentiable adaptation of Otsu's Method and CutOut augmentation. SoftOtsuNet augmentation outperforms all other evaluated augmentation methods on the Fitzpatrick17k dataset (<i>0.75%</i> improvement), Diverse Dermatology Images dataset (<i>1.76%</i> improvement), and our proprietary dataset (<i>0.92%</i> improvement). SoftOtsuNet is only required at training time, meaning inference costs are unchanged from the baseline. This further suggests that even large data-driven models can still benefit from human-engineered unsupervised loss functions.</p>","PeriodicalId":72180,"journal":{"name":"AMIA ... Annual Symposium proceedings. AMIA Symposium","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10785922/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"AMIA ... Annual Symposium proceedings. AMIA Symposium","FirstCategoryId":"1085","ListUrlMain":"","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Data Augmentation is a crucial tool in the Machine Learning (ML) toolbox because it can extract novel, useful training images from an existing dataset, thereby improving accuracy and reducing overfitting in a Deep Neural Network (DNNs). However, clinical dermatology images often contain irrelevant background information,such as furniture and objects in the frame. DNNs make use of that information when optimizing the loss function. Data augmentation methods that preserve this information risk creating biases in the DNN's understanding (for example, that objects in a particular doctor's office are a clue that the patient has cutaneous T-cell lymphoma). Creating a supervised foreground/background segmentation algorithm for clinical dermatology images that removes this irrelevant information would be prohibitively expensive due to labeling costs. To that end, we propose a novel unsupervised DNN that dynamically masks out image information based on a combination of a differentiable adaptation of Otsu's Method and CutOut augmentation. SoftOtsuNet augmentation outperforms all other evaluated augmentation methods on the Fitzpatrick17k dataset (0.75% improvement), Diverse Dermatology Images dataset (1.76% improvement), and our proprietary dataset (0.92% improvement). SoftOtsuNet is only required at training time, meaning inference costs are unchanged from the baseline. This further suggests that even large data-driven models can still benefit from human-engineered unsupervised loss functions.

分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
用于临床皮肤病学图像分类器的无监督 SoftOtsuNet 增强。
数据增强是机器学习(ML)工具箱中的重要工具,因为它可以从现有数据集中提取新颖、有用的训练图像,从而提高深度神经网络(DNN)的准确性并减少过拟合。然而,临床皮肤科图像通常包含无关的背景信息,如框架中的家具和物体。DNN 在优化损失函数时会利用这些信息。保留这些信息的数据增强方法有可能使 DNN 的理解产生偏差(例如,特定医生办公室中的物体是患者患有皮肤 T 细胞淋巴瘤的线索)。由于标注成本的原因,为临床皮肤科图像创建一种能去除这些无关信息的有监督的前景/背景分割算法将非常昂贵。为此,我们提出了一种新颖的无监督 DNN,该 DNN 基于大津方法的差异化适应和 CutOut 增强的组合,动态屏蔽图像信息。在 Fitzpatrick17k 数据集(提高了 0.75%)、Diverse Dermatology Images 数据集(提高了 1.76%)和我们的专有数据集(提高了 0.92%)上,SoftOtsuNet 增强功能优于所有其他经过评估的增强方法。SoftOtsuNet 仅在训练时才需要,这意味着推理成本与基线相比没有变化。这进一步表明,即使是大型数据驱动模型,也能从人工设计的无监督损失函数中获益。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Towards Fair Patient-Trial Matching via Patient-Criterion Level Fairness Constraint. Towards Understanding the Generalization of Medical Text-to-SQL Models and Datasets. Transferable and Interpretable Treatment Effectiveness Prediction for Ovarian Cancer via Multimodal Deep Learning. Understanding Cancer Caregiving and Predicting Burden: An Analytics and Machine Learning Approach. Usability and Recall Evaluation of Virtual Reality Ontology Object Manipulation (VROOM) System.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1