Modern Subtype Classification and Outlier Detection Using the Attention Embedder to Transform Ovarian Cancer Diagnosis.

IF 2.2 4区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Tomography Pub Date : 2024-01-15 DOI:10.3390/tomography10010010
S M Nuruzzaman Nobel, S M Masfequier Rahman Swapno, Md Ashraful Hossain, Mejdl Safran, Sultan Alfarhood, Md Mohsin Kabir, M F Mridha
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Abstract

Ovarian cancer, a deadly female reproductive system disease, is a significant challenge in medical research due to its notorious lethality. Addressing ovarian cancer in the current medical landscape has become more complex than ever. This research explores the complex field of Ovarian Cancer Subtype Classification and the crucial task of Outlier Detection, driven by a progressive automated system, as the need to fight this unforgiving illness becomes critical. This study primarily uses a unique dataset painstakingly selected from 20 esteemed medical institutes. The dataset includes a wide range of images, such as tissue microarray (TMA) images at 40× magnification and whole-slide images (WSI) at 20× magnification. The research is fully committed to identifying abnormalities within this complex environment, going beyond the classification of subtypes of ovarian cancer. We proposed a new Attention Embedder, a state-of-the-art model with effective results in ovarian cancer subtype classification and outlier detection. Using images magnified WSI, the model demonstrated an astonishing 96.42% training accuracy and 95.10% validation accuracy. Similarly, with images magnified via a TMA, the model performed well, obtaining a validation accuracy of 94.90% and a training accuracy of 93.45%. Our fine-tuned hyperparameter testing resulted in exceptional performance on independent images. At 20× magnification, we achieved an accuracy of 93.56%. Even at 40× magnification, our testing accuracy remained high, at 91.37%. This study highlights how machine learning can revolutionize the medical field's ability to classify ovarian cancer subtypes and identify outliers, giving doctors a valuable tool to lessen the severe effects of the disease. Adopting this novel method is likely to improve the practice of medicine and give people living with ovarian cancer worldwide hope.

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利用注意力嵌入器进行现代亚型分类和离群点检测,改变卵巢癌诊断。
卵巢癌是一种致命的女性生殖系统疾病,因其致命性而成为医学研究的重大挑战。在当前的医学环境下,解决卵巢癌问题变得比以往任何时候都更加复杂。本研究探讨了卵巢癌亚型分类的复杂领域以及异常值检测的关键任务,该任务由一个渐进的自动化系统驱动,因为对抗这种无情疾病的需要变得至关重要。这项研究主要使用一个独特的数据集,该数据集是从 20 家备受推崇的医疗机构中精心挑选出来的。数据集包括各种图像,如放大 40 倍的组织微阵列 (TMA) 图像和放大 20 倍的全切片图像 (WSI)。这项研究完全致力于在这一复杂环境中识别异常,而不仅仅是卵巢癌亚型的分类。我们提出了一种新的注意力嵌入器(Attention Embedder),这是一种在卵巢癌亚型分类和异常点检测方面效果显著的先进模型。使用 WSI 放大的图像,该模型的训练准确率和验证准确率分别达到了惊人的 96.42% 和 95.10%。同样,通过 TMA 放大的图像,该模型也表现出色,获得了 94.90% 的验证准确率和 93.45% 的训练准确率。我们的微调超参数测试在独立图像上取得了优异的表现。在放大 20 倍的情况下,我们获得了 93.56% 的准确率。即使放大到 40 倍,我们的测试准确率也保持在 91.37% 的高水平。这项研究强调了机器学习如何能够彻底改变医学领域对卵巢癌亚型进行分类和识别异常值的能力,从而为医生提供一种宝贵的工具来减轻疾病的严重影响。采用这种新方法很可能会改善医疗实践,给全世界的卵巢癌患者带来希望。
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来源期刊
Tomography
Tomography Medicine-Radiology, Nuclear Medicine and Imaging
CiteScore
2.70
自引率
10.50%
发文量
222
期刊介绍: TomographyTM publishes basic (technical and pre-clinical) and clinical scientific articles which involve the advancement of imaging technologies. Tomography encompasses studies that use single or multiple imaging modalities including for example CT, US, PET, SPECT, MR and hyperpolarization technologies, as well as optical modalities (i.e. bioluminescence, photoacoustic, endomicroscopy, fiber optic imaging and optical computed tomography) in basic sciences, engineering, preclinical and clinical medicine. Tomography also welcomes studies involving exploration and refinement of contrast mechanisms and image-derived metrics within and across modalities toward the development of novel imaging probes for image-based feedback and intervention. The use of imaging in biology and medicine provides unparalleled opportunities to noninvasively interrogate tissues to obtain real-time dynamic and quantitative information required for diagnosis and response to interventions and to follow evolving pathological conditions. As multi-modal studies and the complexities of imaging technologies themselves are ever increasing to provide advanced information to scientists and clinicians. Tomography provides a unique publication venue allowing investigators the opportunity to more precisely communicate integrated findings related to the diverse and heterogeneous features associated with underlying anatomical, physiological, functional, metabolic and molecular genetic activities of normal and diseased tissue. Thus Tomography publishes peer-reviewed articles which involve the broad use of imaging of any tissue and disease type including both preclinical and clinical investigations. In addition, hardware/software along with chemical and molecular probe advances are welcome as they are deemed to significantly contribute towards the long-term goal of improving the overall impact of imaging on scientific and clinical discovery.
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