Exploring the Supramolecular Features, Computational Studies, and Molecular Docking Studies of a Carbamate Schiff Base

IF 0.7 4区 化学 Q4 CHEMISTRY, ORGANIC Letters in Organic Chemistry Pub Date : 2024-02-02 DOI:10.2174/0115701786283444231128061732
Sibel Demir Kanmazalp, Necmi Dege, Nabajyoti Baildya, Suman Adhikari
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Abstract

: In the carbamate Schiff base compound, the molecule is stabilized by intramolecular hydrogen bonding interactions along with π···π stacking and C–H···π contacts that lead to the molecule generating diverse supramolecular architecture. The fingerprint plots associated with Hirshfeld surface analysis indicate that the most important contributions for the crystal packing are from H⋯H/H⋯H (81.8%), H⋯O/O⋯H (7.5%), and H⋯N/N⋯H (1.9%) interactions. Furthermore, a computational study is performed to find the interaction energy between molecular pairs, and a description of the active site of the compound has been included. The study inferred the role of various types of interaction energies in stabilizing the molecular pair. Additionally, the carbamate Schiff base compound was tested as a possible inhibitor for a group of the SARS-CoV-2 proteins employing a molecular docking approach. Papain-like protease (PLpro) was shown to have the highest binding affinities. The carbamate Schiff base compound with PLpro’s docking score falls within the acceptable levels for a hit compound.
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探索氨基甲酸酯席夫碱的超分子特征、计算研究和分子对接研究
:在氨基甲酸酯席夫碱化合物中,分子通过分子内氢键相互作用以及π---π堆叠和 C-H--π 接触而得到稳定,从而使分子产生多样化的超分子结构。与 Hirshfeld 表面分析相关的指纹图显示,对晶体结构贡献最大的是 H⋯H/H⋯H (81.8%)、H⋯O/O⋯H (7.5%)和 H⋯N/N⋯H (1.9%)相互作用。此外,还进行了计算研究,以找出分子对之间的相互作用能,并对化合物的活性位点进行了描述。该研究推断了各类相互作用能在稳定分子对方面的作用。此外,还采用分子对接方法测试了氨基甲酸酯席夫碱化合物对一组 SARS-CoV-2 蛋白的可能抑制作用。结果表明,木瓜蛋白酶(Papain-like protease,PLpro)具有最高的结合亲和力。氨基甲酸酯席夫碱化合物与 PLpro 的对接得分符合命中化合物的可接受水平。
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来源期刊
Letters in Organic Chemistry
Letters in Organic Chemistry 化学-有机化学
CiteScore
1.30
自引率
12.50%
发文量
135
审稿时长
7 months
期刊介绍: Aims & Scope Letters in Organic Chemistry publishes original letters (short articles), research articles, mini-reviews and thematic issues based on mini-reviews and short articles, in all areas of organic chemistry including synthesis, bioorganic, medicinal, natural products, organometallic, supramolecular, molecular recognition and physical organic chemistry. The emphasis is to publish quality papers rapidly by taking full advantage of latest technology for both submission and review of the manuscripts. The journal is an essential reading for all organic chemists belonging to both academia and industry.
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