{"title":"Newton-Okounkov bodies of chemical reaction systems","authors":"Nida Kazi Obatake , Elise Walker","doi":"10.1016/j.aam.2024.102672","DOIUrl":null,"url":null,"abstract":"<div><p>Despite their noted potential in polynomial-system solving, there are few concrete examples of Newton-Okounkov bodies arising from applications. Accordingly, in this paper, we introduce a new application of Newton-Okounkov body theory to the study of chemical reaction networks and compute several examples. An important invariant of a chemical reaction network is its maximum number of positive steady states Here, we introduce a new upper bound on this number, namely the ‘Newton-Okounkov body bound’ of a chemical reaction network. Through explicit examples, we show that the Newton-Okounkov body bound of a network gives a good upper bound on its maximum number of positive steady states. We also compare this Newton-Okounkov body bound to a related upper bound, namely the mixed volume of a chemical reaction network, and find that it often achieves better bounds.</p></div>","PeriodicalId":50877,"journal":{"name":"Advances in Applied Mathematics","volume":null,"pages":null},"PeriodicalIF":1.0000,"publicationDate":"2024-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in Applied Mathematics","FirstCategoryId":"100","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0196885824000034","RegionNum":3,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MATHEMATICS, APPLIED","Score":null,"Total":0}
引用次数: 0
Abstract
Despite their noted potential in polynomial-system solving, there are few concrete examples of Newton-Okounkov bodies arising from applications. Accordingly, in this paper, we introduce a new application of Newton-Okounkov body theory to the study of chemical reaction networks and compute several examples. An important invariant of a chemical reaction network is its maximum number of positive steady states Here, we introduce a new upper bound on this number, namely the ‘Newton-Okounkov body bound’ of a chemical reaction network. Through explicit examples, we show that the Newton-Okounkov body bound of a network gives a good upper bound on its maximum number of positive steady states. We also compare this Newton-Okounkov body bound to a related upper bound, namely the mixed volume of a chemical reaction network, and find that it often achieves better bounds.
期刊介绍:
Interdisciplinary in its coverage, Advances in Applied Mathematics is dedicated to the publication of original and survey articles on rigorous methods and results in applied mathematics. The journal features articles on discrete mathematics, discrete probability theory, theoretical statistics, mathematical biology and bioinformatics, applied commutative algebra and algebraic geometry, convexity theory, experimental mathematics, theoretical computer science, and other areas.
Emphasizing papers that represent a substantial mathematical advance in their field, the journal is an excellent source of current information for mathematicians, computer scientists, applied mathematicians, physicists, statisticians, and biologists. Over the past ten years, Advances in Applied Mathematics has published research papers written by many of the foremost mathematicians of our time.