Is the distribution of plasmid lengths bimodal?

IF 1.8 4区 生物学 Q3 GENETICS & HEREDITY Plasmid Pub Date : 2024-01-01 DOI:10.1016/j.plasmid.2024.102721
Ian Dewan, Hildegard Uecker
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Abstract

The length of a plasmid is a key property which is linked to many aspects of plasmid biology. When distributions of plasmid lengths are shown in the literature, they are usually plotted with length on a logarithmic scale. However, a quantity and its logarithm have distinct distributions which may differ considerably in shape. Mistaking the distribution of log-lengths for the distribution of lengths can therefore lead to distorted conclusions about the distribution; in particular, the distribution of log-lengths may be bimodal when the distribution of lengths is only unimodal. This particular confusion has arisen in the literature where the length distribution is often claimed to be bimodal based on examination of what is in fact the log-length distribution. While the length distribution is indeed bimodal within many bacterial families, it is not across the ensemble of all plasmids. We suggest that authors should be careful to show the plasmid length distribution, or to distinguish the two distributions, to avoid misleading inferences.

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质粒长度的分布是双峰的吗?
质粒的长度是一个关键属性,与质粒生物学的许多方面有关。当文献中显示质粒长度的分布时,通常会将长度绘制成对数刻度。然而,一个量和它的对数有不同的分布,在形状上可能有很大差异。因此,将对数长度的分布误认为长度的分布会导致对数长度分布的结论失真;特别是,对数长度的分布可能是双峰分布,而长度的分布只是单峰分布。这种特殊的混淆出现在文献中,根据对数长度分布的研究,长度分布通常被宣称为双峰分布。虽然在许多细菌家族中长度分布确实是双峰的,但在所有质粒的集合中却并非如此。我们建议作者应注意显示质粒长度分布或区分两种分布,以避免误导性推论。
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来源期刊
Plasmid
Plasmid 生物-遗传学
CiteScore
4.70
自引率
3.80%
发文量
21
审稿时长
53 days
期刊介绍: Plasmid publishes original research on genetic elements in all kingdoms of life with emphasis on maintenance, transmission and evolution of extrachromosomal elements. Objects of interest include plasmids, bacteriophages, mobile genetic elements, organelle DNA, and genomic and pathogenicity islands.
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