Plant genomic resources at National Genomics Data Center: assisting in data-driven breeding applications

IF 4.6 4区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY aBIOTECH Pub Date : 2024-02-02 DOI:10.1007/s42994-023-00134-4
Dongmei Tian, Tianyi Xu, Hailong Kang, Hong Luo, Yanqing Wang, Meili Chen, Rujiao Li, Lina Ma, Zhonghuang Wang, Lili Hao, Bixia Tang, Dong Zou, Jingfa Xiao, Wenming Zhao, Yiming Bao, Zhang Zhang, Shuhui Song
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Abstract

Genomic data serve as an invaluable resource for unraveling the intricacies of the higher plant systems, including the constituent elements within and among species. Through various efforts in genomic data archiving, integrative analysis and value-added curation, the National Genomics Data Center (NGDC), which is a part of the China National Center for Bioinformation (CNCB), has successfully established and currently maintains a vast amount of database resources. This dedicated initiative of the NGDC facilitates a data-rich ecosystem that greatly strengthens and supports genomic research efforts. Here, we present a comprehensive overview of central repositories dedicated to archiving, presenting, and sharing plant omics data, introduce knowledgebases focused on variants or gene-based functional insights, highlight species-specific multiple omics database resources, and briefly review the online application tools. We intend that this review can be used as a guide map for plant researchers wishing to select effective data resources from the NGDC for their specific areas of study.

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国家基因组数据中心的植物基因组资源:协助数据驱动的育种应用
基因组数据是揭示高等植物系统复杂性的宝贵资源,包括物种内部和物种之间的组成要素。隶属于中国生物信息中心(CNCB)的国家基因组数据中心(NGDC)通过在基因组数据归档、整合分析和增值管理方面的各种努力,成功建立并维护了大量数据库资源。国家基因组数据中心的这一专门举措促进了一个数据丰富的生态系统,极大地加强和支持了基因组研究工作。在此,我们将全面概述致力于归档、展示和共享植物组学数据的中央资源库,介绍专注于变异或基于基因的功能洞察的知识库,重点介绍特定物种的多组学数据库资源,并简要评述在线应用工具。我们希望本综述可作为植物研究人员的指导地图,帮助他们从国家基因数据中心选择有效的数据资源,用于其特定的研究领域。
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CiteScore
7.70
自引率
2.80%
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0
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