Studies on the binding of wedelolactone to human serum albumin with multi-spectroscopic analysis, molecular docking and molecular dynamic simulation

IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Biophysical chemistry Pub Date : 2024-02-09 DOI:10.1016/j.bpc.2024.107198
Yali Liu, Zhen Yuan, Pan Zhao, Changxin Li, Lu Qin, Tianlun Zhao, Xiaojing Zhu, Shuai Feng
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Abstract

Wedelolactone (WEL) is a small molecule compound isolated from Eclipta prostrate L., which has been reported to possess various biological activities such as anti-hepatotoxicity, anti-hypertension, anti-tumour, anti-phospholipase A2 and detoxification activity against snake venom. In the present study, we investigated the interaction of WEL with human serum albumin (HSA) using simultaneous fluorescence, UV–visible spectroscopy, 3D fluorescence spectroscopy, Fourier transform infrared spectroscopy (FTIR), molecular docking technique and molecular dynamics simulation. We found that the interaction between HSA and WEL can exhibit a static fluorescence burst mechanism, and the binding process is essentially spontaneous, with the main forces manifested as hydrogen bonding, van der Waals force and electrostatic interactions. Competitive binding and molecular docking studies showed that WEL preferentially bound to HSA in substructural region IIA (site I); molecular dynamics simulations showed that HSA interacted with WEL to form a stable complex, which also induced conformational changes in HSA. The study of the interaction between WEL and HSA can provide a reference for a more in-depth study of the pharmacodynamic mechanism of WEL and its further development and utilisation.

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利用多光谱分析、分子对接和分子动力学模拟研究蟛蜞菊内酯与人血清白蛋白的结合情况
蟛蜞菊内酯(WEL)是从蟛蜞菊(Eclipta prostrate L.)中分离出来的一种小分子化合物,据报道它具有多种生物活性,如抗肝毒性、抗高血压、抗肿瘤、抗磷脂酶 A2 和对蛇毒的解毒活性。在本研究中,我们采用同步荧光光谱、紫外可见光谱、三维荧光光谱、傅立叶变换红外光谱、分子对接技术和分子动力学模拟等方法研究了 WEL 与人血清白蛋白(HSA)的相互作用。我们发现,HSA 与 WEL 之间的相互作用可呈现静态荧光猝灭机制,结合过程基本上是自发的,主要作用力表现为氢键、范德华力和静电作用。竞争性结合和分子对接研究表明,WEL优先与亚结构区IIA(位点I)的HSA结合;分子动力学模拟表明,HSA与WEL相互作用形成稳定的复合物,同时诱导HSA发生构象变化。对 WEL 与 HSA 之间相互作用的研究可为更深入地研究 WEL 的药效学机制及其进一步开发和利用提供参考。
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来源期刊
Biophysical chemistry
Biophysical chemistry 生物-生化与分子生物学
CiteScore
6.10
自引率
10.50%
发文量
121
审稿时长
20 days
期刊介绍: Biophysical Chemistry publishes original work and reviews in the areas of chemistry and physics directly impacting biological phenomena. Quantitative analysis of the properties of biological macromolecules, biologically active molecules, macromolecular assemblies and cell components in terms of kinetics, thermodynamics, spatio-temporal organization, NMR and X-ray structural biology, as well as single-molecule detection represent a major focus of the journal. Theoretical and computational treatments of biomacromolecular systems, macromolecular interactions, regulatory control and systems biology are also of interest to the journal.
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