Empirical comparison of deep learning models for fNIRS pain decoding

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2024-02-14 DOI:10.3389/fninf.2024.1320189
Raul Fernandez Rojas, Calvin Joseph, Ghazal Bargshady, Keng-Liang Ou
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Abstract

IntroductionPain assessment is extremely important in patients unable to communicate and it is often done by clinical judgement. However, assessing pain using observable indicators can be challenging for clinicians due to the subjective perceptions, individual differences in pain expression, and potential confounding factors. Therefore, the need for an objective pain assessment method that can assist medical practitioners. Functional near-infrared spectroscopy (fNIRS) has shown promising results to assess the neural function in response of nociception and pain. Previous studies have explored the use of machine learning with hand-crafted features in the assessment of pain.MethodsIn this study, we aim to expand previous studies by exploring the use of deep learning models Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), and (CNN-LSTM) to automatically extract features from fNIRS data and by comparing these with classical machine learning models using hand-crafted features.ResultsThe results showed that the deep learning models exhibited favourable results in the identification of different types of pain in our experiment using only fNIRS input data. The combination of CNN and LSTM in a hybrid model (CNN-LSTM) exhibited the highest performance (accuracy = 91.2%) in our problem setting. Statistical analysis using one-way ANOVA with Tukey's (post-hoc) test performed on accuracies showed that the deep learning models significantly improved accuracy performance as compared to the baseline models.DiscussionOverall, deep learning models showed their potential to learn features automatically without relying on manually-extracted features and the CNN-LSTM model could be used as a possible method of assessment of pain in non-verbal patients. Future research is needed to evaluate the generalisation of this method of pain assessment on independent populations and in real-life scenarios.
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用于 fNIRS 疼痛解码的深度学习模型的经验比较
导言:疼痛评估对于无法交流的患者极为重要,通常需要通过临床判断来完成。然而,由于主观感受、疼痛表现的个体差异以及潜在的混杂因素,使用可观察的指标来评估疼痛对临床医生来说具有挑战性。因此,需要一种客观的疼痛评估方法来帮助医生。功能性近红外光谱(fNIRS)在评估神经功能对痛觉和疼痛的反应方面显示出良好的效果。方法在本研究中,我们旨在扩展之前的研究,探索使用深度学习模型卷积神经网络(CNN)、长短期记忆(LSTM)和(CNN-LSTM)从 fNIRS 数据中自动提取特征,并将其与使用手工创建特征的经典机器学习模型进行比较。结果结果表明,在仅使用 fNIRS 输入数据的实验中,深度学习模型在识别不同类型疼痛方面表现出了良好的效果。在我们的问题设置中,CNN 和 LSTM 的混合模型(CNN-LSTM)表现出了最高的性能(准确率 = 91.2%)。使用单向方差分析和 Tukey's(事后)检验对准确率进行的统计分析表明,与基线模型相比,深度学习模型显著提高了准确率。未来的研究需要评估这种疼痛评估方法在独立人群和现实生活场景中的通用性。
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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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