Plasma Proteome-Wide Mendelian Randomization Analysis Reveals Biomarkers and Therapeutic Targets for Different Stages of COVID-19

Suhas Krishnamoorthy, Ruby Lai-Chong Hoo, Ching-Lung Cheung
{"title":"Plasma Proteome-Wide Mendelian Randomization Analysis Reveals Biomarkers and Therapeutic Targets for Different Stages of COVID-19","authors":"Suhas Krishnamoorthy, Ruby Lai-Chong Hoo, Ching-Lung Cheung","doi":"10.1155/2024/5566180","DOIUrl":null,"url":null,"abstract":"Background. The COVID-19 pandemic caused by the SARS-CoV-2 virus has resulted in a global health crisis with significant morbidity and mortality. While effective vaccinations have been developed, drug treatments for the disease are still required, particularly for different stages of the disease and to combat evolving variants. Identifying reliable biomarkers and potential therapeutic targets for the different stages of COVID-19 is crucial. Methods. Mendelian randomization using the largest publicly available datasets was conducted to identify potential causal plasma proteins for severe COVID-19, hospitalized COVID-19, and SARS-CoV-2 infection. Independent, and strongly associated cis- or pan-pQTLs were used as instrumental variables for each protein. The FDR q-value was used to correct for multiple testing followed by sensitivity analyses, reverse MR and genetic colocalization to ensure the robustness of the results. Results. We identified proteins with strong evidence of causal association with different stages of COVID-19. Some of these proteins were identified previously, such as BGAT and BCAT2, but we also identified the novel proteins, such as KLC1, MRVI1, CACO2, and PCNP. Conclusion. These proteins provide valuable insights into the underlying mechanisms of COVID-19. The identification of these proteins offers new opportunities for developing potential therapeutic targets or biomarkers for the treatment and prevention of COVID-19.","PeriodicalId":505858,"journal":{"name":"Transboundary and Emerging Diseases","volume":"54 2","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Transboundary and Emerging Diseases","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1155/2024/5566180","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Background. The COVID-19 pandemic caused by the SARS-CoV-2 virus has resulted in a global health crisis with significant morbidity and mortality. While effective vaccinations have been developed, drug treatments for the disease are still required, particularly for different stages of the disease and to combat evolving variants. Identifying reliable biomarkers and potential therapeutic targets for the different stages of COVID-19 is crucial. Methods. Mendelian randomization using the largest publicly available datasets was conducted to identify potential causal plasma proteins for severe COVID-19, hospitalized COVID-19, and SARS-CoV-2 infection. Independent, and strongly associated cis- or pan-pQTLs were used as instrumental variables for each protein. The FDR q-value was used to correct for multiple testing followed by sensitivity analyses, reverse MR and genetic colocalization to ensure the robustness of the results. Results. We identified proteins with strong evidence of causal association with different stages of COVID-19. Some of these proteins were identified previously, such as BGAT and BCAT2, but we also identified the novel proteins, such as KLC1, MRVI1, CACO2, and PCNP. Conclusion. These proteins provide valuable insights into the underlying mechanisms of COVID-19. The identification of these proteins offers new opportunities for developing potential therapeutic targets or biomarkers for the treatment and prevention of COVID-19.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
血浆蛋白质组全孟德尔随机分析揭示了 COVID-19 不同阶段的生物标记物和治疗靶点
背景。由 SARS-CoV-2 病毒引起的 COVID-19 大流行导致了全球健康危机,造成了严重的发病率和死亡率。虽然已经开发出了有效的疫苗,但仍需要对该疾病进行药物治疗,特别是针对该疾病的不同阶段和对抗不断演变的变种。针对 COVID-19 的不同阶段确定可靠的生物标志物和潜在的治疗目标至关重要。研究方法利用最大的公开数据集进行孟德尔随机分析,以确定严重 COVID-19、住院 COVID-19 和 SARS-CoV-2 感染的潜在致病血浆蛋白。独立且强相关的顺式或泛 PQTL 被用作每种蛋白质的工具变量。使用 FDR q 值校正多重检验,然后进行敏感性分析、反向 MR 和基因共定位,以确保结果的稳健性。结果我们发现了与 COVID-19 不同阶段存在因果关系的蛋白质。其中一些蛋白质是以前发现的,如 BGAT 和 BCAT2,但我们也发现了一些新的蛋白质,如 KLC1、MRVI1、CACO2 和 PCNP。结论这些蛋白质为了解 COVID-19 的潜在机制提供了宝贵的信息。这些蛋白质的鉴定为开发治疗和预防 COVID-19 的潜在治疗靶点或生物标记物提供了新的机遇。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Genetics and Pathogenicity of Influenza A (H4N6) Virus Isolated from Wild Birds in Jiangsu Province, China, 2023 One-Health Challenge in H9N2 Avian Influenza: Novel Human-Avian Reassortment Virus in Guangdong Province, China Development of Rapid Isothermal Detection Methods Real-Time Fluorescence and Lateral Flow Reverse Transcription Recombinase-Aided Amplification Assay for Bovine Coronavirus Serosurvey and Associated Risk Factors for Bovine Viral Diarrhea Virus Infection in Dromedary Camels in Egypt Landscape-Scale Epidemiological Dynamics of SARS-CoV-2 in White-Tailed Deer
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1