Metagenomic analysis and biodiversity of bacteria in traditional fermented fish or Budu from West Sumatera, Indonesia.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-12-31 eCollection Date: 2023-12-01 DOI:10.5455/javar.2023.j736
Yetti Marlida, Malikil Kudus Susalam, Harnentis Harnentis, Jamsari Jamsari, Nurul Huda, Wan Norhana Md Noordin, Lili Anggraini, Laily Rinda Ardani
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Abstract

Objective: This research aims to investigate the microbial diversity of Budu prepared from fresh and frozen fish from the Pariaman and Pasaman districts in West Sumatra Province, Indonesia, as well as provide basic information about Budu quality.

Materials and methods: To obtain the bacterial microbial composition, deoxyribonucleic acid extraction was carried out using amplicon-sequencing of the 16S-rRNA gene in the V3-V4 region from two types of Budu and carried out in duplicate.

Results: Budu prepared with fresh (Pariaman) or frozen (Pasaman) fish was dominated by Firmicutes (78.455%-92.37%) and Proteobacteria (6.477%-7.23%) phyla. The total microbial species in Budu from Pariaman were higher (227 species) than in Pasaman (153 species). The bacterial species found are Lentibacillus kimchi (1.878%-2.21%), Staphylococcus cohnii (0.597%-0.70%), Peptostreptococcus russeli (0.00%-0.002%), Clostridium disporicum (0.073%-0.09%), Clostridium novyi (0.00%-0.01%), Nioella sediminis (0.00%-0.001%), and Shewanella baltica (0.00%-0.003%). Lentibacillus kimchi, S. cohnii, and C. disporicum are found in both Budu. Nioella sediminis and S. baltica are found in Budu Pariaman. Peptostreptococcus russeli and C. novyi were found in Budu Pasaman.

Conclusion: Metagenomic analysis of Budu from different fish, Pariaman (fresh fish) and Pasaman (frozen fish) showed that the biodiversity of bacteria was barely different. Both Budu found lactic acid bacteria from the Enterococcaceae family, genus Vagococcus, and pathogenic bacteria, such as S. cohnii, P. russeli, C. disporicum, and S. baltica. The discovery of various species of pathogenic bacteria indicates that development is still needed in the Budu production process to improve Budu quality.

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印度尼西亚西苏门答腊传统发酵鱼或布杜中细菌的元基因组分析和生物多样性。
研究目的本研究旨在调查印度尼西亚西苏门答腊省 Pariaman 和 Pasaman 地区新鲜和冷冻鱼类制成的布都的微生物多样性,并提供有关布都质量的基本信息:为获得细菌微生物组成,对两种布都进行了脱氧核糖核酸提取,并对 V3-V4 区域的 16S-rRNA 基因进行了扩增测序,测序结果一式两份:结果:用新鲜鱼(Pariaman)或冷冻鱼(Pasaman)制作的布都主要由真菌(78.455%-92.37%)和变形菌(6.477%-7.23%)组成。帕里亚曼的布都微生物物种总数(227 种)高于帕萨曼(153 种)。发现的细菌种类有:泡菜弯曲杆菌(1.878%-2.21%)、共生葡萄球菌(0.597%-0.70%)、鲁塞利肽链球菌(0.00%-0.002%)、多孔梭菌(0.073%-0.09%)、新梭菌(0.00%-0.01%)、沉积梭菌(0.00%-0.001%)和巴氏雪旺菌(0.00%-0.003%)。在两个布都中都发现了泡菜肠杆菌(Lentibacillus kimchi)、S. cohnii 和 C. disporicum。在布都帕里阿曼发现了 Nioella sediminis 和 S. baltica。在布都帕萨曼发现了 Peptostreptococcus russeli 和 C. novyi:对来自不同鱼类、Pariaman(新鲜鱼类)和 Pasaman(冷冻鱼类)的布杜进行的元基因组分析表明,细菌的生物多样性几乎没有差别。两种布都都发现了肠球菌科的乳酸菌、阴沟球菌属和病原菌,如 S.cohnii、P.russeli、C.disporicum 和 S.baltica。各种致病菌的发现表明,布都的生产过程仍需改进,以提高布都的质量。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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