Yetti Marlida, Malikil Kudus Susalam, Harnentis Harnentis, Jamsari Jamsari, Nurul Huda, Wan Norhana Md Noordin, Lili Anggraini, Laily Rinda Ardani
{"title":"Metagenomic analysis and biodiversity of bacteria in traditional fermented fish or Budu from West Sumatera, Indonesia.","authors":"Yetti Marlida, Malikil Kudus Susalam, Harnentis Harnentis, Jamsari Jamsari, Nurul Huda, Wan Norhana Md Noordin, Lili Anggraini, Laily Rinda Ardani","doi":"10.5455/javar.2023.j736","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>This research aims to investigate the microbial diversity of Budu prepared from fresh and frozen fish from the Pariaman and Pasaman districts in West Sumatra Province, Indonesia, as well as provide basic information about Budu quality.</p><p><strong>Materials and methods: </strong>To obtain the bacterial microbial composition, deoxyribonucleic acid extraction was carried out using amplicon-sequencing of the <i>16S-rRNA</i> gene in the V3-V4 region from two types of Budu and carried out in duplicate.</p><p><strong>Results: </strong>Budu prepared with fresh (Pariaman) or frozen (Pasaman) fish was dominated by Firmicutes (78.455%-92.37%) and Proteobacteria (6.477%-7.23%) phyla. The total microbial species in Budu from Pariaman were higher (227 species) than in Pasaman (153 species). The bacterial species found are <i>Lentibacillus kimchi</i> (1.878%-2.21%), <i>Staphylococcus cohnii</i> (0.597%-0.70%), <i>Peptostreptococcus russeli</i> (0.00%-0.002%), <i>Clostridium disporicum</i> (0.073%-0.09%), <i>Clostridium novyi</i> (0.00%-0.01%), <i>Nioella sediminis</i> (0.00%-0.001%), and <i>Shewanella baltica</i> (0.00%-0.003%). <i>Lentibacillus kimchi, S. cohnii,</i> and <i>C. disporicum</i> are found in both Budu. <i>Nioella sediminis</i> and <i>S. baltica</i> are found in Budu Pariaman. <i>Peptostreptococcus russeli</i> and <i>C. novyi</i> were found in Budu Pasaman.</p><p><strong>Conclusion: </strong>Metagenomic analysis of Budu from different fish, Pariaman (fresh fish) and Pasaman (frozen fish) showed that the biodiversity of bacteria was barely different. Both Budu found lactic acid bacteria from the <i>Enterococcaceae</i> family, genus <i>Vagococcus,</i> and pathogenic bacteria, such as <i>S. cohnii, P. russeli, C. disporicum,</i> and <i>S. baltica</i>. The discovery of various species of pathogenic bacteria indicates that development is still needed in the Budu production process to improve Budu quality.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10868700/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5455/javar.2023.j736","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/12/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Objective: This research aims to investigate the microbial diversity of Budu prepared from fresh and frozen fish from the Pariaman and Pasaman districts in West Sumatra Province, Indonesia, as well as provide basic information about Budu quality.
Materials and methods: To obtain the bacterial microbial composition, deoxyribonucleic acid extraction was carried out using amplicon-sequencing of the 16S-rRNA gene in the V3-V4 region from two types of Budu and carried out in duplicate.
Results: Budu prepared with fresh (Pariaman) or frozen (Pasaman) fish was dominated by Firmicutes (78.455%-92.37%) and Proteobacteria (6.477%-7.23%) phyla. The total microbial species in Budu from Pariaman were higher (227 species) than in Pasaman (153 species). The bacterial species found are Lentibacillus kimchi (1.878%-2.21%), Staphylococcus cohnii (0.597%-0.70%), Peptostreptococcus russeli (0.00%-0.002%), Clostridium disporicum (0.073%-0.09%), Clostridium novyi (0.00%-0.01%), Nioella sediminis (0.00%-0.001%), and Shewanella baltica (0.00%-0.003%). Lentibacillus kimchi, S. cohnii, and C. disporicum are found in both Budu. Nioella sediminis and S. baltica are found in Budu Pariaman. Peptostreptococcus russeli and C. novyi were found in Budu Pasaman.
Conclusion: Metagenomic analysis of Budu from different fish, Pariaman (fresh fish) and Pasaman (frozen fish) showed that the biodiversity of bacteria was barely different. Both Budu found lactic acid bacteria from the Enterococcaceae family, genus Vagococcus, and pathogenic bacteria, such as S. cohnii, P. russeli, C. disporicum, and S. baltica. The discovery of various species of pathogenic bacteria indicates that development is still needed in the Budu production process to improve Budu quality.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.