HSV-1 ICP0 dimer domain adopts a novel β-barrel fold.

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-07-01 Epub Date: 2024-02-19 DOI:10.1002/prot.26673
Erick McCloskey, Maithri Kashipathy, Anne Cooper, Philip Gao, David K Johnson, Kevin P Battaile, Scott Lovell, David J Davido
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Abstract

Infected cell protein 0 (ICP0) is an immediate-early regulatory protein of herpes simplex virus 1 (HSV-1) that possesses E3 ubiquitin ligase activity. ICP0 transactivates viral genes, in part, through its C-terminal dimer domain (residues 555-767). Deletion of this dimer domain results in reduced viral gene expression, lytic infection, and reactivation from latency. Since ICP0's dimer domain is associated with its transactivation activity and efficient viral replication, we wanted to determine the structure of this specific domain. The C-terminus of ICP0 was purified from bacteria and analyzed by X-ray crystallography to solve its structure. Each subunit or monomer in the ICP0 dimer is composed of nine β-strands and two α-helices. Interestingly, two adjacent β-strands from one monomer "reach" into the adjacent subunit during dimer formation, generating two β-barrel-like structures. Additionally, crystallographic analyses indicate a tetramer structure is formed from two β-strands of each dimer, creating a "stacking" of the β-barrels. The structural protein database searches indicate the fold or structure adopted by the ICP0 dimer is novel. The dimer is held together by an extensive network of hydrogen bonds. Computational analyses reveal that ICP0 can either form a dimer or bind to SUMO1 via its C-terminal SUMO-interacting motifs but not both. Understanding the structure of the dimer domain will provide insights into the activities of ICP0 and, ultimately, the HSV-1 life cycle.

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HSV-1 ICP0 二聚体结构域采用了新颖的β-桶状折叠。
感染细胞蛋白 0(ICP0)是单纯疱疹病毒 1(HSV-1)的一种早期调控蛋白,具有 E3 泛素连接酶活性。ICP0 部分通过其 C 端二聚体结构域(残基 555-767)转录病毒基因。缺失该二聚体结构域会导致病毒基因表达、裂解感染和从潜伏期重新激活能力下降。由于 ICP0 的二聚体结构域与其反式激活活性和高效病毒复制有关,我们希望确定这一特定结构域的结构。我们从细菌中纯化了 ICP0 的 C 端,并通过 X 射线晶体学分析解决了它的结构问题。ICP0二聚体中的每个亚基或单体都由九条β链和两条α螺旋组成。有趣的是,在二聚体形成过程中,来自一个单体的两条相邻的 β 链会 "伸入 "相邻的亚基,从而产生两个 β 桶状结构。此外,晶体学分析表明,每个二聚体的两条 β 链会形成一个四聚体结构,从而形成 β 桶的 "堆叠"。结构蛋白质数据库的搜索结果表明,ICP0 二聚体所采用的折叠或结构是新颖的。二聚体通过广泛的氢键网络结合在一起。计算分析表明,ICP0既可以形成二聚体,也可以通过其C端SUMO相互作用基序与SUMO1结合,但不能同时形成二聚体和SUMO1。了解二聚体结构域将有助于深入了解 ICP0 的活动,并最终了解 HSV-1 的生命周期。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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CiteScore
7.20
自引率
4.30%
发文量
567
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